Update BLAST databases #1053

	name: Backend

	on:
	push:
	branches:
	- master
	- develop
	pull_request:
	branches:
	- master
	- develop

	jobs:
	build-backend:
	runs-on: ubuntu-latest
	name: Build Server
	env:
	SBT_BIN: sbt -Dsbt.override.build.repos=true
	MONGODB_URI: mongodb://127.0.0.1:27017/test

	steps:
	- name: Git checkout
	uses: actions/checkout@v2

	- name: Cache SBT
	uses: actions/cache@v2
	with:
	path: \|
	~/.ivy2/cache
	~/.sbt
	~/.m2
	key: ${{ runner.os }}-sbt-${{ hashFiles('**/build.sbt') }}

	- name: Set up Scala
	uses: olafurpg/setup-scala@v10
	with:
	java-version: [email protected]

	- name: Start MongoDB
	uses: supercharge/[email protected]
	with:
	mongodb-version: 4.2

	- name: Install local dependencies
	run: ./bin/install-local-deps.sh

	- name: Compile sbt
	run: sbt compile stage
	timeout-minutes: 30

	- name: Run backend tests
	run: sbt coverage test

	- name: Create coverage report
	run: sbt coverageReport

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v1

	scalafmt:
	runs-on: ubuntu-latest
	name: Lint with Scalafmt

	steps:
	- name: Git checkout
	uses: actions/checkout@v2

	- name: Formatting Scala
	run: sbt scalafmt scalafmtSbt && git diff --exit-code

	- name: Count Lines of Code (cloc)
	uses: djdefi/cloc-action@2

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