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Corrected integration test for intersection with m>1
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OndrejSladky committed Mar 20, 2024
1 parent 2132a9e commit a23ce5e
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions scripts/verify.py
Original file line number Diff line number Diff line change
Expand Up @@ -72,8 +72,8 @@ def verify_intersection(fasta_path: str, interpath: str, k: int, complements: bo
# This assumes that no k-mer appears twice.
run_prophasm2(fasta_path, k, complements, m, "inter1")
run_prophasm2(interpath, k, complements, m, "inter2")
run_jellyfish_count("./bin/inter1.fa", k, complements, m, "inter1")
run_jellyfish_count("./bin/inter2.fa", k, complements, m, "inter2")
run_jellyfish_count("./bin/inter1.fa", k, complements, 1, "inter1")
run_jellyfish_count("./bin/inter2.fa", k, complements, 1, "inter2")
subprocess.run(["jellyfish", "merge", "-L", "2", "-o", f"./bin/inter.jf", "./bin/inter1.jf", "./bin/inter2.jf"])
stats = [{}, {}, {}]
run_jellyfish_count("./bin/simplitigs.fa", k, complements, 1, "simplitigs")
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