variants => genomicVariations

progenetix · Sep 19, 2023 · a5bf584 · a5bf584
1 parent 88b3519
commit a5bf584
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Showing 5 changed files with 13 additions and 15 deletions.
diff --git a/src/hooks/api.js b/src/hooks/api.js
@@ -304,9 +304,7 @@ export function getServiceItemUrl(id, collection, datasetIds) {
 }
 
 export function getDataItemPageUrl(id, entity, datasetIds) {
-  return `${SITE_DEFAULTS.API_PATH}${entity}/?datasetIds=${datasetIds}&${
-    entity == "variants" ? "_id" : "id"
-  }=${id}`
+  return `${SITE_DEFAULTS.API_PATH}${entity}/?datasetIds=${datasetIds}&id=${id}`
 }
 
 export function NoResultsHelp(id, entity) {

diff --git a/src/modules/details-pages/biosamplePage.js b/src/modules/details-pages/biosamplePage.js
@@ -264,7 +264,7 @@ function Biosample({ biosId, biosample, individual, datasetIds }) {
       <BeaconRESTLink
         entryType="biosamples"
         idValue={biosId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         label="Beacon JSON"
       />
@@ -273,7 +273,7 @@ function Biosample({ biosId, biosample, individual, datasetIds }) {
       <BeaconRESTLink
         entryType="biosamples"
         idValue={biosId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         output="pgxseg"
         label="Progenetix .pgxseg file"
@@ -283,7 +283,7 @@ function Biosample({ biosId, biosample, individual, datasetIds }) {
       <BeaconRESTLink
         entryType="biosamples"
         idValue={biosId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         output="vcf"
         label="(experimental) VCF 4.4 file"

diff --git a/src/modules/details-pages/variantPage.js b/src/modules/details-pages/variantPage.js
@@ -306,15 +306,15 @@ function Variant({ variant, id, datasetIds }) {
   <ul>
     <li>Variant as{" "}
       <BeaconRESTLink
-        entryType="variants"
+        entryType="genomicVariations"
         idValue={id}
         datasetIds={datasetIds}
         label="Beacon JSON"
       />
     </li>
     <li>Variant as{" "}
       <BeaconRESTLink
-        entryType="variants"
+        entryType="genomicVariations"
         idValue={id}
         datasetIds={datasetIds}
         output="pgxseg"
@@ -323,7 +323,7 @@ function Variant({ variant, id, datasetIds }) {
     </li>
     <li>Variant as{" "}
       <BeaconRESTLink
-        entryType="variants"
+        entryType="genomicVariations"
         idValue={id}
         datasetIds={datasetIds}
         output="vcf"

diff --git a/remnants/callsetPage.js b/remnants/callsetPage.js
@@ -101,7 +101,7 @@ function Callset({ callset, csId, datasetIds }) {
       <BeaconRESTLink
         entryType="analyses"
         idValue={csId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         label="Beacon JSON"
       />
@@ -110,7 +110,7 @@ function Callset({ callset, csId, datasetIds }) {
       <BeaconRESTLink
         entryType="analyses"
         idValue={csId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         output="pgxseg"
         label="Progenetix .pgxseg file"
@@ -120,7 +120,7 @@ function Callset({ callset, csId, datasetIds }) {
       <BeaconRESTLink
         entryType="analyses"
         idValue={csId}
-        responseType="variants"
+        responseType="genomicVariations"
         datasetIds={datasetIds}
         output="vcf"
         label="(experimental) VCF 4.4 file"

diff --git a/remnants/individualPage.js b/remnants/individualPage.js
@@ -161,7 +161,7 @@ function Individual({ individual, datasetIds }) {
           <BeaconRESTLink
             entryType="individuals"
             idValue={individual.id}
-            responseType="variants"
+            responseType="genomicVariations"
             datasetIds={datasetIds}
             label="Beacon JSON"
           />
@@ -170,7 +170,7 @@ function Individual({ individual, datasetIds }) {
           <BeaconRESTLink
             entryType="individuals"
             idValue={individual.id}
-            responseType="variants"
+            responseType="genomicVariations"
             datasetIds={datasetIds}
             output="pgxseg"
             label="Progenetix .pgxseg file"
@@ -180,7 +180,7 @@ function Individual({ individual, datasetIds }) {
           <BeaconRESTLink
             entryType="individuals"
             idValue={individual.id}
-            responseType="variants"
+            responseType="genomicVariations"
             datasetIds={datasetIds}
             output="vcf"
             label="(experimental) VCF 4.4 file"