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This update changes the project structure towards easier updates. Particularly, it integrates components and api.js in line with progenetix-web, and moves most site specific code & configs to `site-specific`. Now, besides CSS ... the content specific for a project should be in `site-specific` and in `pages`. These changes are probably incomplete & can use refinements so more re-shuffling to be expected.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| import React from "react" | ||
| import Link from "next/link" | ||
| import { SITE_DEFAULTS } from "../hooks/api" | ||
|
|
||
| export default function BeaconPlusNav() { | ||
| return ( | ||
| <header className="section Nav__header"> | ||
| <nav | ||
| className="BeaconPlus__container Nav__wrapper" | ||
| role="navigation" | ||
| aria-label="main navigation" | ||
| > | ||
| <Link href="/"> | ||
| <a className="Nav__logo"> | ||
| Beacon<sup className="Nav__plus">+</sup> | ||
| </a> | ||
| </Link> | ||
|
|
||
| <div className="Nav__links"> | ||
| {/* | ||
| <ActiveLink label="Aggregator" href="/beaconAggregator/" /> | ||
| */} | ||
| <a href={SITE_DEFAULTS.MASTERROOTLINK} className="navbar-item"> | ||
| Progenetix | ||
| </a> | ||
| <a href={SITE_DEFAULTS.MASTERDOCLINK} className="navbar-item"> | ||
| Help | ||
| </a> | ||
| </div> | ||
| </nav> | ||
| </header> | ||
| ) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| import React from "react" | ||
| import { ErrorBoundary } from "react-error-boundary" | ||
| import Head from "next/head" | ||
| import BeaconPlusNav from "./BeaconPlusNav" | ||
| import {ErrorFallback} from "./MenuHelpers" | ||
| import { SITE_DEFAULTS, THISYEAR } from "../hooks/api" | ||
|
|
||
| export function EntityLayout({ title, headline, children }) { | ||
| return ( | ||
| <> | ||
| <BeaconPlusNav /> | ||
| <div className="section"> | ||
| <div className="BeaconPlus__container"> | ||
| <Head> | ||
| <title>{title || ""}</title> | ||
| <meta name="viewport" content="initial-scale=1.0, width=device-width" /> | ||
| </Head> | ||
| <div className="Layout__lead"> | ||
| {headline && <h1 className="title is-4">{headline}</h1>} | ||
| <ErrorBoundary | ||
| FallbackComponent={ErrorFallback} | ||
| onReset={() => { | ||
| // reset the state of your app so the error doesn't happen again | ||
| }} | ||
| > | ||
| {children} | ||
| </ErrorBoundary> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| <footer className="footer"> | ||
| <div className="content container has-text-centered"> | ||
| © 2000 - {THISYEAR} Progenetix Cancer Genomics Information Resource by | ||
| the{" "} | ||
| <a href={SITE_DEFAULTS.ORGSITELINK}> | ||
| Computational Oncogenomics Group | ||
| </a>{" "} | ||
| at the{" "} | ||
| <a href="https://www.mls.uzh.ch/en/research/baudis/"> | ||
| University of Zurich | ||
| </a>{" "} | ||
| and the{" "} | ||
| <a href="http://sib.swiss/baudis-michael/"> | ||
| Swiss Institute of Bioinformatics{" "} | ||
| <span className="span-red">SIB</span> | ||
| </a>{" "} | ||
| is licensed under CC BY 4.0 | ||
| <a rel="license" href="https://creativecommons.org/licenses/by/4.0"> | ||
| <img className="Layout__cc__icons" src="/img/cc-cc.svg" /> | ||
| <img className="Layout__cc__icons" src="/img/cc-by.svg" /> | ||
| </a> | ||
| <br /> | ||
| No responsibility is taken for the correctness of the data presented | ||
| nor the results achieved with the Progenetix tools. | ||
| </div> | ||
| </footer> | ||
| </> | ||
| ) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| import unified from "unified" | ||
| import parse from "remark-parse" | ||
| import remark2react from "remark-react" | ||
|
|
||
| export function MarkdownParser(md) { | ||
| return unified().use(parse).use(remark2react).processSync(md).result | ||
| } |
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