Remove heavy dependencies (PyPlot and IJulia).

Related #2

.github/workflows/Tutorials.yml

@@ -29,7 +29,9 @@ jobs:
       - uses: julia-actions/julia-buildpkg@v1
 
       - name: Instantiate project
-        run: julia --project=. -e 'using Pkg; Pkg.instantiate()'
+        run: |
+          julia --project=. -e 'using Pkg; Pkg.instantiate()'
+          julia --project=. -e 'using Pkg; Pkg.add("PyPlot")'
 
       - name: Test notebooks
         working-directory: ./docs/src/tutorials

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.8.2"
 manifest_format = "2.0"
-project_hash = "0d59df24b4144f6e863a6f0b4aca934968d4b81c"
+project_hash = "f4e685f5f9d91b12d31049a4c3fc27d3d6ab6f5e"
 
 [[deps.ANSIColoredPrinters]]
 git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
@@ -49,18 +49,6 @@ git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
 version = "0.7.1"
 
-[[deps.ColorTypes]]
-deps = ["FixedPointNumbers", "Random"]
-git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4"
-uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
-version = "0.11.4"
-
-[[deps.Colors]]
-deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
-git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a"
-uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
-version = "0.12.10"
-
 [[deps.CommonSubexpressions]]
 deps = ["MacroTools", "Test"]
 git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7"
@@ -78,12 +66,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
 version = "0.5.2+0"
 
-[[deps.Conda]]
-deps = ["Downloads", "JSON", "VersionParsing"]
-git-tree-sha1 = "e32a90da027ca45d84678b826fffd3110bb3fc90"
-uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
-version = "1.8.0"
-
 [[deps.Crayons]]
 git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@@ -185,12 +167,6 @@ git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
 version = "0.13.7"
 
-[[deps.FixedPointNumbers]]
-deps = ["Statistics"]
-git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
-uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
-version = "0.8.4"
-
 [[deps.Formatting]]
 deps = ["Printf"]
 git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
@@ -230,12 +206,6 @@ git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641"
 uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
 version = "0.3.11"
 
-[[deps.IJulia]]
-deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"]
-git-tree-sha1 = "59e19713542dd9dd02f31d59edbada69530d6a14"
-uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
-version = "1.24.0"
-
 [[deps.IOCapture]]
 deps = ["Logging", "Random"]
 git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a"
@@ -285,11 +255,6 @@ git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.3"
 
-[[deps.LaTeXStrings]]
-git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
-uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.3.0"
-
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -340,12 +305,6 @@ git-tree-sha1 = "1d9bc5c1a6e7ee24effb93f175c9342f9154d97f"
 uuid = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf"
 version = "1.2.0"
 
-[[deps.MbedTLS]]
-deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
-git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b"
-uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "1.1.7"
-
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
@@ -440,18 +399,6 @@ version = "1.3.1"
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
-[[deps.PyCall]]
-deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
-git-tree-sha1 = "62f417f6ad727987c755549e9cd88c46578da562"
-uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-version = "1.95.1"
-
-[[deps.PyPlot]]
-deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"]
-git-tree-sha1 = "92e7ca803b579b8b817f004e74b205a706d9a974"
-uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee"
-version = "2.11.1"
-
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661"
@@ -515,12 +462,6 @@ version = "1.0.3"
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
-[[deps.SoftGlobalScope]]
-deps = ["REPL"]
-git-tree-sha1 = "986ec2b6162ccb95de5892ed17832f95badf770c"
-uuid = "b85f4697-e234-5449-a836-ec8e2f98b302"
-version = "1.1.0"
-
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
 git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00"
@@ -618,29 +559,12 @@ version = "1.0.2"
 [[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
-[[deps.VersionParsing]]
-git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
-uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
-version = "1.3.0"
-
 [[deps.WeakRefStrings]]
 deps = ["DataAPI", "InlineStrings", "Parsers"]
 git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
 uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
 version = "1.4.2"
 
-[[deps.ZMQ]]
-deps = ["FileWatching", "Sockets", "ZeroMQ_jll"]
-git-tree-sha1 = "356d2bdcc0bce90aabee1d1c0f6d6f301eda8f77"
-uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1"
-version = "1.2.2"
-
-[[deps.ZeroMQ_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"]
-git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47"
-uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568"
-version = "4.3.4+0"
-
 [[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
@@ -651,12 +575,6 @@ deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
 version = "5.1.1+0"
 
-[[deps.libsodium_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e"
-uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8"
-version = "1.0.20+0"
-
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

Project.toml

@@ -11,24 +11,20 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 Gen = "ea4f424c-a589-11e8-07c0-fd5c91b9da4a"
-IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Match = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf"
 Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [compat]
-julia = "1.8"
 CSV = "0.10.7"
 DataFrames = "1.3.6"
 Distributions = "0.25.79"
 DocStringExtensions = "0.9.3"
 Documenter = "0.27.24"
 Gen = "0.4.5"
-IJulia = "1.24.0"
 Match = "1.2.0"
 Parameters = "0.12.3"
-PyPlot = "2.11.1"
+julia = "1.8"

docs/src/tutorials.md

@@ -9,11 +9,15 @@ Pages = [
 ]
 ```
 
-The above tutorials can be run interactively in the browser using
+To run the tutorials interactively, first install
+[IJulia](https://julialang.github.io/IJulia.jl/stable/manual/installation/)
+and [PyPlot](https://github.com/JuliaPy/PyPlot.jl).
+Then run the following commands from the terminal, making sure to replace
+`</path/to/>AutoGP.jl` with the actual path to the directory:
 
     $ export JULIA_NUM_THREADS=$(nproc)
-    $ export JULIA_PROJECT=/path/to/AutoGP.jl
+    $ export JULIA_PROJECT=</path/to/>AutoGP.jl
     $ cd ${JULIA_PROJECT}/docs/src/tutorials
     $ julia -e 'using IJulia; notebook(dir=".")'
 
-The notebook will be available at localhost, typically port 8888.
+The notebook server will be available in the browser at https://localhost:8888.