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Hi,
I'm encountering the following problem when running scPredict:
scp <- scPredict(object = scp, newData = test_data, threshold = 0.5)
Predicting cell types
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=01m 07s
Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
In addition: Warning message:
In method$prob(modelFit = modelFit, newdata = newdata, submodels = param) :
kernlab class probability calculations failed; returning NAs
My test data is properly formatted (gene names as rows, and cell names as columns). I tried also to adjust the threshold but the error persists. Would you know what is the problem?
Thank you,
Lisa
The text was updated successfully, but these errors were encountered:
Hi,
I'm encountering the following problem when running scPredict:
My test data is properly formatted (gene names as rows, and cell names as columns). I tried also to adjust the threshold but the error persists. Would you know what is the problem?
Thank you,
Lisa
The text was updated successfully, but these errors were encountered: