Code

Vcf support#308

Code

Merged

nevrome merged 34 commits intomasterposeidon-framework/poseidon-hs:masterfrom vcf_supportposeidon-framework/poseidon-hs:vcf_supportCopy head branch name to clipboardOct 25, 2024

+1,018-577

Commits

Commits on Aug 2, 2024

• finalised changes in GenotypeData.hs

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  committed
  a9ae332

• in the middle of adapting to new GenotypeData

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  5a76fe5

• adapted forge

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  2137153

Commits on Aug 5, 2024

• in the middle of fixing compiler bugs

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  committed
  2c0908d

• fixed forge and genoconvert

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  7df42a4

• in the middle of fixing rectify

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  1287f1d

• fixed Rectify

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  4b83f0a

• fixed serve

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  832d50d

• fixed survey

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  fc7d6bc

• fixed validate

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  b50e384

• fixed optparse module

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  c8ec12c

• fixed pedantic errors

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  d239c1c

Commits on Sep 6, 2024

• test compile, but fail

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  committed
  f828d8c

• fixed some test bugs

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  committed
  af97954

• Merge branch 'gzip-support-reading' into vcf_support

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  authored
  fe31593

• Merge branch 'gzip-support-reading' into vcf_support

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  committed
  d95f866

• fixed more tests

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  6054801

• updated golden tests

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  c68c13d

Commits on Sep 9, 2024

• Merge branch 'master' into vcf_support

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  authored
  fa23dea

Commits on Oct 23, 2024

• added VCF read test

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  committed
  b63eb01

• stylish-haskell

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  3aef6a3

Commits on Oct 24, 2024

• moved getFormat to GenotypeData.hs

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  e269c58

• added help texts for genofile input

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  fb59083

• refactored test packages

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  abb2ff8

Commits on Oct 25, 2024

• added VCF to init golden-test

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  committed
  3a376aa

• added genoconvert golden test with VCF

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  committed
  b9d2fcd

• added forge golden test with VCF

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  committed
  06dd173

• stylish-haskell

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  committed
  fe70c20

• Merge branch 'master' into vcf_support

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  authored
  d2ab538

• fixed some minors after merging master

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  committed
  d8d2da8

• fixed some import layout with stylish-haskell

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  855614b

• bumped version nr and updated changelogs

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  committed
  cb4a017

• added note about lack of writing support for gzip and VCF.

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  committed
  7015965

• some small changes in the release changelog

  nevrome

  committed
  d10a59f