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added a warning about undocumented changes to the changelog of the v1…
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….5.7.0 release
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nevrome committed Nov 6, 2024
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Expand Up @@ -8,6 +8,11 @@ This patch release fixes three minor bugs, some of which were accidentally intro

### V 1.5.7.0

> [!WARNING]
> On 2024/11/06 we realized that this release includes a breaking change that is not documented below.
> The command line input interface for unpackaged genotype data was modified from previously `--inFormat EIGENSTRAT|PLINK + --genoFile + --snpFile + --indFile` to now `--genoFile + --snpFile + --indFile` and `--bedFile + --bimFile + --famFile`. So the format selection with the `--inFormat` argument was removed and replaced with separate file selectors for EIGENSTRAT and PLINK data.
> This affects all `trident` subcommands that allow reading of unpackaged genotype data, namely `init`, `forge`, `genoconvert` and `validate`.
This release further improves `.janno` parsing error messages and adds reading support for gzipped PLINK (`.bed` and `.bim`) and EIGENSTRAT (`.geno` and `.snp`) files. We also added (experimental) support for reading VCF files.

#### Better .janno error messages
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