rev dep check

poissonconsulting · Oct 5, 2023 · e619d6e · e619d6e
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diff --git a/cran-comments.md b/cran-comments.md
@@ -1,6 +1,6 @@
 ## Test environments
 
-release 4.3.0
+release 4.3.1
 
 * OSX (local) - release
 * OSX (actions) - release
@@ -14,7 +14,8 @@ release 4.3.0
 
 ## revdepcheck results
 
-We checked 32 reverse dependencies (26 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 33 reverse dependencies (27 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages
+
diff --git a/revdep/README.md b/revdep/README.md
@@ -1,30 +1,30 @@
 # Platform
 
-|field    |value                                                                                       |
-|:--------|:-------------------------------------------------------------------------------------------|
-|version  |R version 4.3.0 (2023-04-21)                                                                |
-|os       |macOS Ventura 13.2.1                                                                        |
-|system   |aarch64, darwin20                                                                           |
-|ui       |RStudio                                                                                     |
-|language |(EN)                                                                                        |
-|collate  |en_US.UTF-8                                                                                 |
-|ctype    |en_US.UTF-8                                                                                 |
-|tz       |America/Vancouver                                                                           |
-|date     |2023-05-26                                                                                  |
-|rstudio  |2023.03.1+446 Cherry Blossom (desktop)                                                      |
-|pandoc   |2.19.2 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown) |
+|field    |value                                                                                      |
+|:--------|:------------------------------------------------------------------------------------------|
+|version  |R version 4.3.1 (2023-06-16)                                                               |
+|os       |macOS Ventura 13.5.1                                                                       |
+|system   |aarch64, darwin20                                                                          |
+|ui       |RStudio                                                                                    |
+|language |(EN)                                                                                       |
+|collate  |en_US.UTF-8                                                                                |
+|ctype    |en_US.UTF-8                                                                                |
+|tz       |America/Vancouver                                                                          |
+|date     |2023-10-05                                                                                 |
+|rstudio  |2023.09.0+463 Desert Sunflower (desktop)                                                   |
+|pandoc   |3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown) |
 
 # Dependencies
 
 |package |old   |new   |Δ  |
 |:-------|:-----|:-----|:--|
-|chk     |0.8.1 |0.9.0 |*  |
+|chk     |0.9.0 |0.9.1 |*  |
 
 # Revdeps
 
 ## New problems (1)
 
 |package   |version |error     |warning |note |
 |:---------|:-------|:---------|:-------|:----|
-|[biodbKegg](problems.md#biodbkegg)|1.6.0   |-1 __+1__ |        |     |
+|[biodbKegg](problems.md#biodbkegg)|1.6.1   |-1 __+1__ |        |     |
 
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,6 +1,6 @@
 ## revdepcheck results
 
-We checked 32 reverse dependencies (26 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 33 reverse dependencies (27 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages

diff --git a/revdep/problems.md b/revdep/problems.md
@@ -2,11 +2,11 @@
 
 <details>
 
-* Version: 1.6.0
+* Version: 1.6.1
 * GitHub: https://github.com/pkrog/biodbKegg
 * Source code: https://github.com/cran/biodbKegg
-* Date/Publication: 2023-04-25
-* Number of recursive dependencies: 125
+* Date/Publication: 2023-08-02
+* Number of recursive dependencies: 126
 
 Run `revdepcheck::revdep_details(, "biodbKegg")` for more info
 
@@ -20,19 +20,19 @@ Run `revdepcheck::revdep_details(, "biodbKegg")` for more info
      ERROR
     Running the tests in ‘tests/testthat.R’ failed.
     Last 13 lines of output:
-      ── Failure (???): We can search for an entry by name. ──────────────────────────
-      id %in% ids is not TRUE
+       3.   └─testthat::expect_false(...)
+      ── Failure ('test_500_orthology.R:4:5'): We can search entry by name. ──────────
+      length(id) > 0 is not TRUE
       
       `actual`:   FALSE
       `expected`: TRUE 
-      While searching for entry K12668 by name "dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit DAD1/OST2".
       Backtrace:
           ▆
        1. ├─base::do.call(fct, params)
-       2. └─biodb (local) `<fn>`(conn = `<KggOrthC>`, opt = `<named list>`)
-       3.   └─testthat::expect_true(id %in% ids, msg)
+       2. └─biodbKegg (local) `<fn>`(conn = `<KggOrthC>`)
+       3.   └─testthat::expect_true(length(id) > 0) at test_500_orthology.R:4:4
       
-      [ FAIL 4 | WARN 2 | SKIP 0 | PASS 1384 ]
+      [ FAIL 3 | WARN 0 | SKIP 0 | PASS 1282 ]
       Error: Test failures
       Execution halted
     ```