Avoid hoveron warning #401
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # NOTE: This workflow is overkill for most R packages | |
| # check-standard.yaml is likely a better choice | |
| # usethis::use_github_action("check-standard") will install it. | |
| # | |
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # vdiffr & shinytest only runs on mac r-release since the results aren't cross-platform | |
| - {os: macOS-latest, r: 'release', visual_tests: true, node: "14.x", shinytest: true} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: '4.1'} | |
| - {os: windows-latest, r: '3.6'} | |
| - {os: ubuntu-latest, r: 'devel'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| - {os: ubuntu-latest, r: 'oldrel-2'} | |
| - {os: ubuntu-latest, r: 'oldrel-3'} | |
| - {os: ubuntu-latest, r: 'oldrel-4'} | |
| env: | |
| VISUAL_TESTS: ${{ matrix.config.visual_tests }} | |
| SHINYTEST: ${{ matrix.config.shinytest }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }} | |
| plotly_username: ${{ secrets.PLOTLY_USERNAME }} | |
| plotly_api_key: ${{ secrets.PLOTLY_API_KEY }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 3 | |
| needs: check | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Install kaleido | |
| if: matrix.config.visual_tests == true | |
| run: | | |
| sudo chown -R $UID $CONDA # https://github.com/nextstrain/conda/issues/5 | |
| Rscript -e "reticulate::install_miniconda()" | |
| Rscript -e "reticulate::conda_install('r-reticulate', 'python-kaleido')" | |
| Rscript -e "reticulate::conda_install('r-reticulate', 'plotly', channel = 'plotly')" | |
| Rscript -e "reticulate::use_miniconda('r-reticulate')" | |
| - name: Install shinytest deps | |
| if: matrix.config.shinytest == true | |
| run: | | |
| Rscript -e 'shinytest::installDependencies()' | |
| R CMD install . | |
| shell: bash | |
| # Run test() before R CMD check since, for some reason, rcmdcheck::rcmdcheck() skips vdiffr tests | |
| - name: Run Tests | |
| run: | | |
| options(crayon.enabled = TRUE, testthat.progress.max_fails=1000) | |
| res <- devtools::test() | |
| df <- as.data.frame(res) | |
| if (sum(df$failed) > 0 || any(df$error)) stop("GHA CI tests failed") | |
| shell: Rscript {0} | |
| # Upload the whole pkg since tests where run with devtools::test() | |
| - name: Upload check results | |
| if: always() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: ./ | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| check-dir: '"check"' | |
| # Run check with --no-tests since we ran them abve | |
| # 2023-01-03: `{purrr}` v1.0.0 had trouble on Windows without the `--no-multiarch` | |
| # https://github.com/plotly/plotly.R/pull/2221 | |
| args: 'c("--no-tests", "--no-manual", "--as-cran", "--no-multiarch")' | |
| error-on: '"warning"' | |
| #- name: Show testthat output | |
| # if: always() | |
| # run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| # shell: bash |