A GUI editor to create and edit 2d spatial SBML models of bio-chemical reactions and simulate them using the dune-copasi solver for reaction-diffusion systems.
To get started, download and run the GUI for your operating system
| Linux | MacOS | Windows |
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Or take a look at our website or the documentation
Pre-release preview binaries are also available for testing new features before the next release.
Note: on linux some additional system libraries are required that may not be installed by default. To install them:
- Fedora/RHEL/CentOS:
sudo yum install xcb-util-image xcb-util-keysyms xcb-util-renderutil xcb-util-wm
Bug reports and feature requests are very welcome, as are fixes or improvements to the documentation (to edit a page in the documentation, click the 'Edit on GitHub' button in the top right).
If you are interested in contributing code, please see the contributing guidelines.
Spatial Model Editor makes use of the following open source libraries:
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dune-copasi - license: GPL2 + runtime exception
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QCustomPlot - license: GPL
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LLVM Core - license: Apache 2.0 License with LLVM exceptions
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GNU Multiple Precision Arithmetic Library - license: LGPL
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Computational Geometry Algorithms Library - license: GPL
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oneTBB - license: Apache-2.0
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Open Source Computer Vision Library - license: Apache-2.0
The source code in this repository is released under the MIT license, which is a permissive GPL-compatible license.
The open source libraries that it uses are either also released under a permissive GPL-compatible license, or under a GPL license. As described in the gpl-faq, this means that the work as a whole is then licensed under the GPL.