Releases: physimals/oxasl
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. To install pyaml into fslpython use:
fslpython -m pip install pyaml --user
If you want to use the HTML reporting feature, sphinx is also required. To install into fslpython use:
fslpython -m pip install sphinx --user
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.
This release replaces v0.1.0 and includes minor documentation and error handling fixes.
Ubuntu 18.04 / 16.04
Centos 7
... in progress
OSX Mojave 10.14.1
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. All can be installed using pip if required, e.g.
pip install pyaml
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.
This release replaces v0.0.6 and includes fixes for structural registration and increases the maximum number of iterations in the VEASL decoding plugin to reduce the chance of this failing to converge.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. All can be installed using pip if required, e.g.
pip install pyaml
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.
This release includes fixes for reporting of motion parameters, an improved method for combining variances with vessel-encoded data and support for using Fabber via the command line API.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. All can be installed using pip if required, e.g.
pip install pyaml
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.
This release fixes incorrect inversion efficiency for vessel-encoded data, fixes to run correctly under FSL6 and adds the option to output variance/std dev.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. All can be installed using pip if required, e.g.
pip install pyaml
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including vessel-encoded data plugin and dependencies
These development packages include the oxasl and oxasl_ve packages, the fslpy, fabber and veaslc dependencies and a wrapper script to run the pipeline in an fslpython environment
Other required dependencies are numpy, nibabel, six and pyaml. These must be installed separately. In an fslpython environment they should all exist already, with the possible exception of pyaml. All can be installed using pip if required, e.g.
pip install pyaml
The pipeline is under development and has not been battle tested yet. Please contact [email protected] with any issues or other feedback.