feat: add scripts to setup FLOWViZ and PhyloDB.

scripts/README.md

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+# FLOWViZ
+
+## Setup
+
+To setup FLOWViZ, the `flowviz_setup.sh` script can be used.
+
+Run the script with the following command (inside the `scripts` directory):
+
+```bash
+./flowviz_setup.sh
+```
+
+It creates the FLOWViZ directory and clones the repository into it, and then, as the script itself tells you, it will only execute steps 1 and 2 of the manual setup that is present here: https://github.com/devandrepascoa/FLOWViZ?tab=readme-ov-file#manual-setup
+
+**After running `flowviz_setup.sh`, you still need to execute steps 3 to 6 of the manual
+setup.**
+
+## Clean up
+
+To clean up the setup, the `flowviz_cleanup.sh` script can be used.
+
+Run the script with the following command (inside the `scripts` directory):
+
+```bash
+./flowviz_cleanup.sh
+```
+
+It will remove the FLOWViZ directory and all its contents, after having destroyed any running containers.
+
+# PhyloDB
+
+## Setup
+To setup PhyloDB, the `phyloDB_setup.sh` script can be used.
+
+Run the script with the following command (inside the `scripts` directory):
+
+```bash
+./phyloDB_setup.sh
+```
+
+It creates the PhyloDB directory and clones the repository into it, then launches the PhyloDB containers.
+
+## Clean up
+
+To clean up the setup, the `phyloDB_cleanup.sh` script can be used.
+
+Run the script with the following command (inside the `scripts` directory):
+
+```bash
+./phyloDB_cleanup.sh
+```
+
+It will remove the PhyloDB directory and all its contents, after having destroyed any running containers.

scripts/flowviz_cleanup.sh

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+#!/bin/bash
+
+cd ../FLOWViZ
+
+./cleanup.sh
+
+cd ..
+
+rm -rf ./FLOWViZ/

scripts/flowviz_setup.sh

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+#!/bin/bash
+
+cd ..
+
+git clone https://github.com/devandrepascoa/FLOWViZ.git # https://github.com/DIVA-IPL-Project/FLOWViZ.git
+
+cd ./FLOWViZ
+
+echo "Steps 1 and 2 of the manual setup are going to be executed..."
+
+./setupAirflow.sh
+
+echo "Setting up FLOWViZ docker..."
+docker compose up -d
+echo "FLOWViZ docker setup completed!"
+
+echo "Steps 1 and 2 of the manual setup were executed successfully!"
+echo "Now you still need to execute steps 3 to 6 of the manual setup. (https://github.com/devandrepascoa/FLOWViZ?tab=readme-ov-file#manual-setup)"

scripts/phylodb_cleanup.sh

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+#!/bin/bash
+
+cd ../phyloDB
+
+docker compose down
+
+cd ..
+
+rm -rf ./phyloDB/

scripts/phylodb_setup.sh

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+#!/bin/bash
+
+cd ..
+
+git clone https://github.com/devandrepascoa/phyloDB.git # https://github.com/phyloviz/phyloDB.git
+
+cd phyloDB/
+
+./build-docker.sh
+./launch-docker.sh