PHUSE SDE 2021 Python Session

This is the material for the PHUSE SDE Event regarding the use of Python for a couple of scenarios that can apply to clinical research. It is not intended as an introduction

Setup

We recommend that you use Visual Studio Code as a client for the Workbooks

• Install the Python Extension

Installing

1. Clone the project using git git clone https://github.com/phuse-org/phuse-python-sde-sep2021
2. Install Python
   • Windows - https://www.python.org/downloads/windows/ -> Windows Installer (64bit)
   • OSX - Install using homebrew (https://brew.sh/) -> brew install python
   • Linux - Follow your packaging environment guide (eg apt)
3. Install Poetry (a python environment management tool)
   • pip install --user poetry
4. Install the dependencies
   • poetry install
5. Create a file called .env and in it put the following (replace <token> with your CDISC Library Token) CDISC_LIBRARY_API_TOKEN=<token>
6. Open the project
   • Using Visual Studio Code: Open the folder using Visual Studio Code and then open Introduction
   • Using Jupyter: start the Jupyter Lab Shell by running the following:
     • Shell: jupyter lab
     • Batch: start.bat