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How to split HiC reads into haplotypes? #87

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DayTimeMouse opened this issue Oct 21, 2024 · 0 comments

DayTimeMouse commented Oct 21, 2024

Hi，

Thanks for developing this nice tool.

I have obtained two haplotypes assembly(hap1.fa and hap2.fa). Then, how to get haplotype-specific HiC reads? Using haplotype-specific kmers?

Can FALCON-Phase do this? Or, do you have some ideas for this?

Best regards.

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