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1. FALCON-Phase FALCON-Phase Public

   FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

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2. juicebox_scripts juicebox_scripts Public

   A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

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3. hic_qc hic_qc Public

   A (very) simple script to QC Hi-C data.

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4. matlock matlock Public

   Simple tools for working with Hi-C data

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5. polar_star polar_star Public

   long-read depth breaking

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6. update_assembly update_assembly Public

   Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase

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