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Hi, I encountered the following error when I install FALCON-Phase
make[1]: Entering directory `/users/chenb/Software/biosoft/FALCON-Phase/htslib' gcc -Wall -g -O2 -I. -c -o kfunc.o kfunc.c gcc -Wall -g -O2 -I. -c -o knetfile.o knetfile.c gcc -Wall -g -O2 -I. -c -o kstring.o kstring.c gcc -Wall -g -O2 -I. -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -Wall -g -O2 -I. -c -o bgzf.o bgzf.c gcc -Wall -g -O2 -I. -c -o errmod.o errmod.c gcc -Wall -g -O2 -I. -c -o faidx.o faidx.c gcc -Wall -g -O2 -I. -c -o hfile.o hfile.c gcc -Wall -g -O2 -I. -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.7"' > version.h gcc -Wall -g -O2 -I. -c -o hts.o hts.c hts.c: In function ‘hts_idx_init’: hts.c:1366:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow] 1366 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; | ^~~ gcc -Wall -g -O2 -I. -c -o hts_os.o hts_os.c gcc -Wall -g -O2 -I. -c -o md5.o md5.c gcc -Wall -g -O2 -I. -c -o multipart.o multipart.c gcc -Wall -g -O2 -I. -c -o probaln.o probaln.c gcc -Wall -g -O2 -I. -c -o realn.o realn.c gcc -Wall -g -O2 -I. -c -o regidx.o regidx.c gcc -Wall -g -O2 -I. -c -o sam.o sam.c In file included from /usr/include/string.h:633, from sam.c:31: sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^~~~~~~ gcc -Wall -g -O2 -I. -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -Wall -g -O2 -I. -c -o vcf_sweep.o vcf_sweep.c ... gcc -Wall -g -O2 -I. -c -o test/test-bcf-translate.o test/test-bcf-translate.c gcc -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/users/chenb/Software/anaconda3/envs/denovo_asm/lib -Wl,-rpath-link,/users/chenb/Software/anaconda3/envs/denovo_asm/lib -L/users/chenb/Software/anaconda3/envs/denovo_asm/lib -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread make[1]: Leaving directory `/users/chenb/Software/biosoft/FALCON-Phase/htslib' gcc -Wall -O3 -I../htslib -Isrc -c matrix.c -o matrix.o gcc -Wall -O3 -I../htslib -Isrc -c bam_filt.c -o bam_filt.o bam_filt.c: In function ‘filter_bam’: bam_filt.c:416:6: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable] 416 | int okay; | ^~~~ gcc -Wall -O3 -I../htslib -Isrc -c count_motif.c -o count_motif.o gcc -Wall -O3 -I../htslib -Isrc -c dna.c -o dna.o gcc -Wall -O3 -I../htslib -Isrc -c run_phasing.c -o run_phasing.o gcc -Wall -O3 -I../htslib -Isrc -c string_parser.c -o string_parser.o gcc -Wall -O3 main.c matrix.o bam_filt.o count_motif.o dna.o run_phasing.o string_parser.o -I../htslib -Isrc ../htslib/libhts.a -lbz2 -llzma -lz -lm -lpthread -o ../bin/falcon-phase bam_filt.o:(.bss+0x50): multiple definition of `rp' /tmp/ccMrEQYU.o:(.bss+0x70): first defined here run_phasing.o:(.bss+0x0): multiple definition of `global_opts_phasing' /tmp/ccMrEQYU.o:(.bss+0x20): first defined here ... ../htslib/libhts.a(hfile_libcurl.o): In function `libcurl_exit': /users/chenb/Software/biosoft/FALCON-Phase/htslib/hfile_libcurl.c:289: undefined reference to `curl_global_cleanup' ../htslib/libhts.a(hfile_s3.o): In function `s3_sign': /users/chenb/Software/biosoft/FALCON-Phase/htslib/hfile_s3.c:77: undefined reference to `EVP_sha1' /users/chenb/Software/biosoft/FALCON-Phase/htslib/hfile_s3.c:77: undefined reference to `HMAC' collect2: error: ld returned 1 exit status make: *** [../bin/falcon-phase] Error 1
Can someone please advise. Thank you in advance!
The text was updated successfully, but these errors were encountered:
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Hi,
I encountered the following error when I install FALCON-Phase
Can someone please advise. Thank you in advance!
The text was updated successfully, but these errors were encountered: