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Closes #56 eg program #114

Merged
merged 14 commits into from
Sep 30, 2024
Merged

Closes #56 eg program #114

merged 14 commits into from
Sep 30, 2024

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vbshuliar
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@vbshuliar vbshuliar commented Jul 31, 2024

Thank you for your Pull Request! We have developed this task checklist from the Development Process Guide to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral codebase remains robust and consistent.

Please check off each taskbox as an acknowledgment that you completed the task or check off that it is not relevant to your Pull Request. This checklist is part of the Github Action workflows and the Pull Request will not be merged into the devel branch until you have checked off each task.

  • Place Closes #<insert_issue_number> into the beginning of your Pull Request Title (Use Edit button in top-right if you need to update)
  • Code is formatted according to the tidyverse style guide. Run styler::style_file() to style R and Rmd files
  • Updated relevant unit tests or have written new unit tests, which should consider realistic data scenarios and edge cases, e.g. empty datasets, errors, boundary cases etc. - See Unit Test Guide
  • If you removed/replaced any function and/or function parameters, did you fully follow the deprecation guidance?
  • Update to all relevant roxygen headers and examples, including keywords and families. Refer to the categorization of functions to tag appropriate keyword/family.
  • Run devtools::document() so all .Rd files in the man folder and the NAMESPACE file in the project root are updated appropriately
  • Address any updates needed for vignettes and/or templates
  • Update NEWS.md if the changes pertain to a user-facing function (i.e. it has an @export tag) or documentation aimed at users (rather than developers)
  • Build admiral site pkgdown::build_site() and check that all affected examples are displayed correctly and that all new functions occur on the "Reference" page.
  • Address or fix all lintr warnings and errors - lintr::lint_package()
  • Run R CMD check locally and address all errors and warnings - devtools::check()
  • Link the issue in the Development Section on the right hand side.
  • Address all merge conflicts and resolve appropriately
  • Pat yourself on the back for a job well done! Much love to your accomplishment!

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github-actions bot commented Jul 31, 2024

Code Coverage

Package Line Rate Health
pharmaversesdtm 0%
Summary 0% (0 / 41)

@vbshuliar vbshuliar changed the title #56 eg program #<56> eg program Jul 31, 2024
@vbshuliar vbshuliar changed the title #<56> eg program Closes #56 eg program Jul 31, 2024
@vbshuliar vbshuliar self-assigned this Jul 31, 2024
@vbshuliar vbshuliar linked an issue Jul 31, 2024 that may be closed by this pull request
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@manciniedoardo manciniedoardo left a comment

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Thanks @vbshuliar - you did a super job for a first pass at this 😄

I've left some syntax/code comments, then @kaz462 and I can do a second review once these are addressed and look at the actual data as well!

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@manciniedoardo
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Thanks @vbshuliar this is super 🚀

@kaz462 would you be able to give a second review here, including passing this version of eg into the admiral ADEG template to see if anything goes wrong? Then maybe we can get the NEST team to take a final look before we merge in.

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Also not sure why the Man pages/Roxygen test keeps failing, i re-ran roxygenise() but no dice.

@vbshuliar
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Thank you very much for the opportunity to contribute to pharmaversesdtm and approving the pull request👌

@manciniedoardo
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@vbshuliar no problem. Actually can you make one last commit and add yourself to the DESCRIPTION file under authors?

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@vbshuliar btw if you have an ORCID you can also add that to the description file.

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@kaz462 kaz462 left a comment

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Thanks @vbshuliar for creating the EG data, looks awesome!

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kaz462 commented Sep 6, 2024

@kaz462 would you be able to give a second review here, including passing this version of eg into the admiral ADEG template to see if anything goes wrong? Then maybe we can get the NEST team to take a final look before we merge in.

I passed this version of eg into the admiral ADEG template, everything is fine.

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@vbshuliar can you work on this next week?

Additionally, if you merge main into your issue branch, it should fix the failing Roxygen check 😄

@manciniedoardo manciniedoardo merged commit facb27b into main Sep 30, 2024
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@manciniedoardo manciniedoardo deleted the 56_eg_program branch September 30, 2024 14:04
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no source/original program for admiral_eg.rda
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