#86 rs_imwg: update comments and documentation

pharmaverse · May 24, 2024 · 1c967af · 1c967af
1 parent 8780ccc
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Showing 4 changed files with 27 additions and 6 deletions.
diff --git a/R/data.R b/R/data.R
@@ -162,6 +162,22 @@
 #' @author Rohan Thampi
 "rs_onco_irecist"
 
+#' Disease Response Dataset (IMWG)
+#'
+#' A SDTM RS dataset using IMWG criteria. The dataset contains just a few patients.
+#' It is intended for vignettes and examples of ADaM dataset creation.
+#'
+#' @author Vinh Nguyen
+"rs_onco_imwg"
+
+#' Supplemental Disease Response Dataset (IMWG)
+#'
+#' A SDTM supplemental RS dataset using IMWG criteria. It is intended to be used
+#' together with `rs_onco_imwg`.
+#'
+#' @author Vinh Nguyen
+"supprs_onco_imwg"
+
 #' Supplemental Adverse Events Dataset
 #'
 #' A SDTM SUPPAE dataset from the CDISC pilot project

diff --git a/data-raw/rs_supprs_onco_imwg.R b/data-raw/rs_supprs_onco_imwg.R
@@ -1,10 +1,12 @@
-# Packages: ---------------------------------------------------------------
-library(dplyr)
+# Datasets: rs_onco_imwg, supprs_onco_imwg
+# Description: RS Oncology and SUPPRS dataset using IMWG criteria
 
-# Tribble data: -----------------------------------------------------------
+# Load libraries -----
+library(dplyr)
 
+# Create rs_onco_imwg ----
 rs_onco_imwg <- tibble::tribble(
-       ~USUBJID, ~RSSEQ, ~RSLNKGRP,  ~RSTESTCD,            ~RSTEST, ~RSORRES, ~RSSTRESC, ~RSSTAT, ~RSREASND,        ~RSEVAL, ~VISITNUM,            ~VISIT,       ~RSDTC, ~RSDY,
+  ~USUBJID,      ~RSSEQ, ~RSLNKGRP,  ~RSTESTCD,            ~RSTEST, ~RSORRES, ~RSSTRESC, ~RSSTAT, ~RSREASND,        ~RSEVAL, ~VISITNUM,            ~VISIT,       ~RSDTC, ~RSDY,
   "01-701-1015",     7L,      "A2", "OVRLRESP", "Overall Response",     "PD",      "PD",      NA,        NA, "INVESTIGATOR",         7,          "WEEK 6", "2014-02-12",   42L,
   "01-701-1028",     7L,      "A2", "OVRLRESP", "Overall Response",    "sCR",     "sCR",      NA,        NA, "INVESTIGATOR",         7,          "WEEK 6",    "2013-08",    NA,
   "01-701-1028",    16L,      "A3", "OVRLRESP", "Overall Response",    "sCR",     "sCR",      NA,        NA, "INVESTIGATOR",         9,         "WEEK 12", "2013-10-09",   84L,
@@ -83,12 +85,13 @@ rs_onco_imwg <- tibble::tribble(
     RSDY
   )
 
+attr(rs_onco_imwg, "label") <- "Disease Response (IMWG)"
 
 usethis::use_data(rs_onco_imwg, overwrite = TRUE)
 
-
+# Create supprs_onco_imwg ----
 supprs_onco_imwg <- tibble::tribble(
-       ~USUBJID, ~IDVARVAL,     ~QNAM,                            ~QLABEL,        ~QVAL,
+  ~USUBJID,      ~IDVARVAL,     ~QNAM,                            ~QLABEL,        ~QVAL,
   "01-701-1015",        7L,   "PDOFL",       "Progressive Disease: Other",          "Y",
   "01-701-1015",        7L, "DTHPDFL", "Death Due to Progressive Disease",          "Y",
   "01-701-1097",        7L,   "PDOFL",       "Progressive Disease: Other",          "Y",
@@ -120,4 +123,6 @@ supprs_onco_imwg <- tibble::tribble(
     STUDYID, RDOMAIN, USUBJID, IDVAR, IDVARVAL, QNAM, QLABEL, QVAL, QORIG
   )
 
+attr(supprs_onco_imwg, "label") <- "Supplemental Qualifiers for RS_ONCO_IMWG"
+
 usethis::use_data(supprs_onco_imwg, overwrite = TRUE)
diff --git a/data/rs_onco_imwg.rda b/data/rs_onco_imwg.rda
diff --git a/data/supprs_onco_imwg.rda b/data/supprs_onco_imwg.rda