use :: convention

pharmaverse · Sep 10, 2024 · a456a5b · a456a5b
1 parent fc90f51
commit a456a5b
Show file tree

Hide file tree

Showing 7 changed files with 15 additions and 15 deletions.
diff --git a/R/derive_params_growth_age.R b/R/derive_params_growth_age.R
@@ -118,9 +118,9 @@
 #' library(admiral, warn.conflicts = FALSE)
 #' library(pharmaversesdtm, warn.conflicts = FALSE)
 #'
-#' advs <- dm_peds %>%
+#' advs <- pharmaversesdtm::dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., vs_peds, by = "USUBJID") %>%
+#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)

diff --git a/R/derive_params_growth_height.R b/R/derive_params_growth_height.R
@@ -118,9 +118,9 @@
 #'
 #' # derive weight for height/length only for those under 2 years old using WHO
 #' # weight for length reference file
-#' advs <- dm_peds %>%
+#' advs <- pharmaversesdtm::dm_peds %>%
 #'   select(USUBJID, BRTHDTC, SEX) %>%
-#'   right_join(., vs_peds, by = "USUBJID") %>%
+#'   right_join(., pharmaversesdtm::vs_peds, by = "USUBJID") %>%
 #'   mutate(
 #'     VSDT = ymd(VSDTC),
 #'     BRTHDT = ymd(BRTHDTC)
@@ -133,7 +133,7 @@
 #'     out_unit = "days"
 #'   )
 #'
-#' heights <- vs_peds %>%
+#' heights <- pharmaverse::vs_peds %>%
 #'   filter(VSTESTCD == "HEIGHT") %>%
 #'   select(USUBJID, VSSTRESN, VSSTRESU, VSDTC) %>%
 #'   rename(

diff --git a/data-raw/adsl_peds.R b/data-raw/adsl_peds.R
@@ -11,7 +11,7 @@ library(stringr)
 # Create a basic ADSL for pediatrics ----
 
 # Read in input data ----
-dm_peds <- dm_peds
+dm_peds <- pharmaversesdtm::dm_peds
 ex <- ex
 
 # Derivations ----

diff --git a/inst/templates/ad_advs.R b/inst/templates/ad_advs.R
@@ -181,8 +181,8 @@ who_wt_for_lgth <- who_wt_for_lgth_boys %>%
 # as needed and assign to the variables below.
 # For illustration purposes read in admiral test data
 
-vs_peds <- vs_peds
-data("adsl_peds")
+vs_peds <- pharmaversesdtm::vs_peds
+adsl_peds <- admiralpeds::adsl_peds
 
 vs <- vs_peds
 adsl <- adsl_peds %>% select(-DOMAIN)

diff --git a/man/derive_params_growth_age.Rd b/man/derive_params_growth_age.Rd
diff --git a/man/derive_params_growth_height.Rd b/man/derive_params_growth_height.Rd
diff --git a/vignettes/advs.Rmd b/vignettes/advs.Rmd
@@ -232,8 +232,8 @@ include the pediatrics-specific parameters as needed - for example:
 | BMIPCTL   | BMI-for-age percentile | 10       | Subject Characteristic | 1          |
 
 ```{r echo=FALSE, message=FALSE}
-vs_peds <- vs_peds
-data("adsl_peds")
+vs_peds <- pharmaversesdtm::vs_peds
+adsl_peds <- admiralpeds::adsl_peds
 
 vs <- convert_blanks_to_na(vs_peds)
 adsl <- adsl_peds %>% select(-DOMAIN)