admiralophtha 1.1.0

This is the 1.1 release of {admiralophtha}. The package was updated as follows:

Updates to Functions

• The following function arguments of derive_var_afeye() are entering the next (and final) phase of the deprecation process (#223):

  • The argument dataset_occ
  • The argument lat_vals

Various

• All vignettes and templates in {admiralophtha} have been updated to use the {admiral} subject keys option rather than
  explicitly quoting key variables such as STUYDID and USUBJID. For instance, a line such as by_vars = exprs(STUDYID, USUBJID)
  would be replaced by by_vars = get_admiral_option("subject_keys") (#226).

admiralophtha 1.0.0

This is the 1.0 release of {admiralophtha}, where we focused on releasing a mature and increasingly stable package for all your ophthalmology ADaM needs. The package was updated as follows:

Updates to Templates

• Removed analysis_value argument in the calls to derive_param_computed() in ADBCVA template in line with the deprecation of this argument in the new version of {admiral}. Variable values for parameters of interest are now all populated through the set_values_to argument (#207).

• Modified calls to derive_summary_records() in ADVFQ template in line with the updates to this function in the new version of the {admiral} package. The filter argument is now renamed to filter_add, the argument dataset_add is now always specified and the variable values are now all populated through the set_values_to argument (#204).

Updates to Documentation

• Added release date for {admiralophtha} 1.0 to the front page (#203).

• Removed analysis_value argument in the calls to derive_param_computed() in ADBCVA vignette in line with the deprecation of this argument in the new version of {admiral}. Variable values for parameters of interest are now all populated through the set_values_to argument (#207).

• Modified calls to derive_summary_records() in ADVFQ vignette in line with the updates to this function in the new version of the {admiral} package. The filter argument is now renamed to filter_add, the argument dataset_add is now always specified and the variable values are now all populated through the set_values_to argument (#204).

Updates to Functions

• derive_var_afeye() was updated (#214):

  • A bug was removed where the function issued warnings when missing xxLOC values were present in the input dataset.
  • The argument dataset_occ was deprecated in favor of dataset, in line with {admiral} conventions.
  • The argument lat_vals was deprecated. Laterality values are now just expected to be "LEFT", "RIGHT" or "BILATERAL".

Various

• Website now has button/links to Slack channel and GitHub Issues (#206).

• Test coverage is now improved to 100% (#217).

admiralophtha 0.3.0

This is the third release of {admiralophtha}.

admiralophtha 0.2.0

This is the second release of {admiralophtha}.

admiralophtha 0.1.0

admiralophtha 0.1.0

This is the first release of {admiralophtha}.

New Features

• Added a function to derive the variable STUDYEYE in ADSL (issue #9).
• Added a function to derive the variable AFEYE in Occurrence datasets (issue #10).
• Added a function to derive the criterion flags in ADBCVA (issue #49).
• Added a function to convert LogMAR scores to ETDRS scores (issue #50).
• Added a function to convert ETDRS scores to LogMAR scores (issue #50).
• Created ophthalmology-specific test data for the EX SDTM domain, stored in admiralophtha package and accessible by calling data(admiralophtha_ex) (issue #36).
• Created ophthalmology-specific test data for the SC and OE SDTM domains, stored in admiral package and accessible by calling data(admiral_sc) or data(admiral_oe) (issues #11 and #13).
• Updated AE and QS test datasets in admiral to include ophthalmology-specific variables and records, such as laterality variables in AE and VFQ records in QS (issues #12 and #52).

Documentation

The {admiralophtha} package website is now up and running, complete with vignettes for popular ophthalmology datasets (ADOE, ADBCVA, ADVFQ).