Closes #2427 general issue adopt data and data raw conventions

.Rbuildignore

@@ -31,3 +31,5 @@
 ^\.devcontainer$
 ^vignettes/articles$
 ^inst/cheatsheet$
+^data-raw$
+^doc$

.gitignore

@@ -54,3 +54,5 @@ admiral*.tgz
 ._.DS_Store
 
 .Rprofile
+/doc/
+/Meta/

.lycheeignore

@@ -7,3 +7,4 @@ https://raw.githubusercontent.com/pharmaverse/admiral/main/inst/cheatsheet/cheat
 https://rsc.niaid.nih.gov/clinical-research-sites/daids-adverse-event-grading-tables
 https://rsc.niaid.nih.gov/sites/default/files/daidsgradingcorrectedv21.pdf
 https://www.fda.gov/media/116737/download
+

data-raw/adlb_grading/atoxgr_sources.R

@@ -0,0 +1,22 @@
+atoxgr_criteria <- system.file("adlb_grading/adlb_grading_spec.xlsx", package = "admiral")
+# Contrary to our usual convention the use of `::` here is explicit. This way we
+# avoid having to list {readxl} in "Imports" and instead get away with just
+# listing it in "Depends".
+
+atoxgr_criteria_ctcv4 <- atoxgr_criteria %>%
+  readxl::read_excel(sheet = "NCICTCAEv4") %>%
+  dplyr::mutate(GRADE_CRITERIA_CODE = gsub("[\r\n]", " ", GRADE_CRITERIA_CODE))
+
+usethis::use_data(atoxgr_criteria_ctcv4, overwrite = TRUE)
+
+atoxgr_criteria_ctcv5 <- atoxgr_criteria %>%
+  readxl::read_excel(sheet = "NCICTCAEv5") %>%
+  dplyr::mutate(GRADE_CRITERIA_CODE = gsub("[\r\n]", " ", GRADE_CRITERIA_CODE))
+
+use_data(atoxgr_criteria_ctcv5, overwrite = TRUE)
+
+atoxgr_criteria_daids <- atoxgr_criteria %>%
+  readxl::read_excel(sheet = "DAIDS") %>%
+  dplyr::mutate(GRADE_CRITERIA_CODE = gsub("[\r\n]", " ", GRADE_CRITERIA_CODE))
+
+use_data(atoxgr_criteria_daids, overwrite = TRUE)