Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closes #2012_derive_vars_dy #2013

Merged
merged 8 commits into from
Aug 1, 2023
Merged
32 changes: 11 additions & 21 deletions R/derive_vars_dy.R
Original file line number Diff line number Diff line change
Expand Up @@ -102,31 +102,21 @@ derive_vars_dy <- function(dataset,
abort(err_msg)
}

dy_vars <- if_else(
# named vector passed to `.names` in `across()` to derive name of dy_vars
dy_vars <- set_names(if_else(
source_names == "",
str_replace_all(vars2chr(source_vars), "(DT|DTM)$", "DY"),
source_names
)
), vars2chr(source_vars))

warn_if_vars_exist(dataset, dy_vars)

if (n_vars > 1L) {
dataset %>%
mutate(
across(
.cols = vars2chr(unname(source_vars)),
.fns = list(temp = ~
compute_duration(start_date = !!reference_date, end_date = .))
)
) %>%
rename_with(
.cols = ends_with("temp"),
.fn = ~dy_vars
)
} else {
dataset %>%
mutate(
!!sym(dy_vars) :=
compute_duration(start_date = !!reference_date, end_date = !!source_vars[[1]])
dataset %>%
mutate(
across(
.cols = vars2chr(unname(source_vars)),
.fns = ~ compute_duration(start_date = !!reference_date, end_date = .x),
.names = "{dy_vars}"
)
}
)
}
32 changes: 32 additions & 0 deletions tests/testthat/test-derive_vars_dy.R
Original file line number Diff line number Diff line change
Expand Up @@ -285,3 +285,35 @@ test_that("derive_vars_dy Test 9: Single named --DT input when ref date is --DTM
keys = c("STUDYID", "USUBJID")
)
})

## Test 10: no error if input with variable end with `_temp` ----
test_that("derive_vars_dy Test 10: no error if input with variable end with `_temp`", {
datain <- tibble::tribble(
~STUDYID, ~USUBJID, ~TRTSDTM, ~ASTDT, ~test_temp,
"TEST01", "PAT01", "2014-01-17T23:59:59", "2014-01-18", "test"
) %>%
mutate(
TRTSDTM = lubridate::as_datetime(TRTSDTM),
ASTDT = lubridate::ymd(ASTDT)
)

expected_output <- tibble::tribble(
~STUDYID, ~USUBJID, ~TRTSDTM, ~ASTDT, ~test_temp, ~ASTDY,
"TEST01", "PAT01", "2014-01-17T23:59:59", "2014-01-18", "test", 2
) %>%
mutate(
TRTSDTM = lubridate::as_datetime(TRTSDTM),
ASTDT = lubridate::ymd(ASTDT)
)

actual_output <- derive_vars_dy(datain,
reference_date = TRTSDTM,
source_vars = exprs(ASTDT)
)

expect_dfs_equal(
expected_output,
actual_output,
keys = c("STUDYID", "USUBJID")
)
})
Loading