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pharmaverse · Oct 2, 2024 · fa79598 · fa79598
1 parent 6ff41a3
commit fa79598
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Showing 3 changed files with 17 additions and 13 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -45,8 +45,8 @@
 </details>
 
 # admiral 1.1.1
-- `derive_vars_atc()` and `create_single_dose_dataset()` `by_vars` argument updated to use `get_admiral_option("subject_keys")` instead of hardcoded USUBJID or STUDYID.
-- test scripts, R, and Rmd files for `create_single_dose_dataset` and `occds.Rmd` updated to include a STUDYID column because of `get_admiral_option("subject_keys")` update above. 
+- `derive_vars_atc()` and `create_single_dose_dataset()` `by_vars` argument updated to use `get_admiral_option("subject_keys")` instead of  USUBJID or STUDYID.
+- test scripts, R, and markdown files for `create_single_dose_dataset` and `occds.Rmd` updated to include a `STUDYID` column because of `get_admiral_option("subject_keys")` update above. 
 - `derive_extreme_event()` was fixed such that `check_type = "none"` is accepted
 again. (#2462)
 

diff --git a/tests/testthat/test-create_single_dose_dataset.R b/tests/testthat/test-create_single_dose_dataset.R
@@ -136,8 +136,10 @@ test_that("create_single_dose_dataset Test 3: Works for different treatments", {
       input,
       start_datetime = ASTDTM,
       end_datetime = AENDTM,
-      keep_source_vars = exprs(!!!get_admiral_option("subject_keys"),
-      EXDOSFRQ, ASTDT, ASTDTM, AENDT, AENDTM, EXTRT)
+      keep_source_vars = exprs(
+        !!!get_admiral_option("subject_keys"),
+        EXDOSFRQ, ASTDT, ASTDTM, AENDT, AENDTM, EXTRT
+      )
     ),
     expected_output,
     keys = c("EXTRT", "ASTDT")

diff --git a/tests/testthat/test-derive_vars_transposed.R b/tests/testthat/test-derive_vars_transposed.R
@@ -1,15 +1,15 @@
 dataset <- tibble::tribble(
   ~STUDYID, ~USUBJID, ~VAR1,
-  "STUDY01", "P01",    3,
-  "STUDY01", "P02",    31,
-  "STUDY01", "P03",    42
+  "STUDY01", "P01", 3,
+  "STUDY01", "P02", 31,
+  "STUDY01", "P03", 42
 )
 dataset_merge <- tibble::tribble(
   ~STUDYID, ~USUBJID, ~TESTCD, ~VALUE,
-  "STUDY01", "P01",    "T01",   31,
-  "STUDY01", "P01",    "T02",   5,
-  "STUDY01", "P02",    "T01",   3,
-  "STUDY01", "P03",    "T02",   9
+  "STUDY01", "P01", "T01", 31,
+  "STUDY01", "P01", "T02", 5,
+  "STUDY01", "P02", "T01", 3,
+  "STUDY01", "P03", "T02", 9
 )
 
 ## Test 1: the merge dataset is transposed and merged correctly ----
@@ -167,6 +167,8 @@ test_that("derive_vars_transposed Test 5: ATC variables are merged properly", {
     id_vars = exprs(FAGRPID)
   )
 
-  expect_dfs_equal(expected_output, actual_output, keys = c("STUDYID", "USUBJID",
-  "CMDECOD", "ATC4CD"))
+  expect_dfs_equal(expected_output, actual_output, keys = c(
+    "STUDYID", "USUBJID",
+    "CMDECOD", "ATC4CD"
+  ))
 })