Added STUDYID column to fix error with derive_vars_atc after correcti…

…ng by_vars.
pharmaverse · Oct 2, 2024 · e908b48 · e908b48
1 parent c8922f3
commit e908b48
Showing 1 changed file with 25 additions and 25 deletions.
diff --git a/vignettes/occds.Rmd b/vignettes/occds.Rmd
@@ -173,33 +173,33 @@ The expected result is the input dataset with ATC variables added.
 
 ```{r eval=TRUE}
 cm <- tibble::tribble(
-  ~USUBJID,       ~CMGRPID, ~CMREFID,  ~CMDECOD,
-  "BP40257-1001",     "14", "1192056", "PARACETAMOL",
-  "BP40257-1001",     "18", "2007001", "SOLUMEDROL",
-  "BP40257-1002",     "19", "2791596", "SPIRONOLACTONE"
+  ~STUDYID,   ~USUBJID,       ~CMGRPID, ~CMREFID,  ~CMDECOD,
+  "STUDY01", "BP40257-1001",     "14", "1192056", "PARACETAMOL",
+  "STUDY01", "BP40257-1001",     "18", "2007001", "SOLUMEDROL",
+  "STUDY01", "BP40257-1002",     "19", "2791596", "SPIRONOLACTONE"
 )
 facm <- tibble::tribble(
-  ~USUBJID,       ~FAGRPID,  ~FAREFID, ~FATESTCD,  ~FASTRESC,
-  "BP40257-1001",      "1", "1192056", "CMATC1CD",       "N",
-  "BP40257-1001",      "1", "1192056", "CMATC2CD",     "N02",
-  "BP40257-1001",      "1", "1192056", "CMATC3CD",    "N02B",
-  "BP40257-1001",      "1", "1192056", "CMATC4CD",   "N02BE",
-  "BP40257-1001",      "1", "2007001", "CMATC1CD",       "D",
-  "BP40257-1001",      "1", "2007001", "CMATC2CD",     "D10",
-  "BP40257-1001",      "1", "2007001", "CMATC3CD",    "D10A",
-  "BP40257-1001",      "1", "2007001", "CMATC4CD",   "D10AA",
-  "BP40257-1001",      "2", "2007001", "CMATC1CD",       "D",
-  "BP40257-1001",      "2", "2007001", "CMATC2CD",     "D07",
-  "BP40257-1001",      "2", "2007001", "CMATC3CD",    "D07A",
-  "BP40257-1001",      "2", "2007001", "CMATC4CD",   "D07AA",
-  "BP40257-1001",      "3", "2007001", "CMATC1CD",       "H",
-  "BP40257-1001",      "3", "2007001", "CMATC2CD",     "H02",
-  "BP40257-1001",      "3", "2007001", "CMATC3CD",    "H02A",
-  "BP40257-1001",      "3", "2007001", "CMATC4CD",   "H02AB",
-  "BP40257-1002",      "1", "2791596", "CMATC1CD",       "C",
-  "BP40257-1002",      "1", "2791596", "CMATC2CD",     "C03",
-  "BP40257-1002",      "1", "2791596", "CMATC3CD",    "C03D",
-  "BP40257-1002",      "1", "2791596", "CMATC4CD",   "C03DA"
+  ~STUDYID,   ~USUBJID,       ~FAGRPID,  ~FAREFID, ~FATESTCD,  ~FASTRESC,
+  "STUDY01", "BP40257-1001",      "1", "1192056", "CMATC1CD",       "N",
+  "STUDY01", "BP40257-1001",      "1", "1192056", "CMATC2CD",     "N02",
+  "STUDY01", "BP40257-1001",      "1", "1192056", "CMATC3CD",    "N02B",
+  "STUDY01", "BP40257-1001",      "1", "1192056", "CMATC4CD",   "N02BE",
+  "STUDY01", "BP40257-1001",      "1", "2007001", "CMATC1CD",       "D",
+  "STUDY01", "BP40257-1001",      "1", "2007001", "CMATC2CD",     "D10",
+  "STUDY01", "BP40257-1001",      "1", "2007001", "CMATC3CD",    "D10A",
+  "STUDY01", "BP40257-1001",      "1", "2007001", "CMATC4CD",   "D10AA",
+  "STUDY01", "BP40257-1001",      "2", "2007001", "CMATC1CD",       "D",
+  "STUDY01", "BP40257-1001",      "2", "2007001", "CMATC2CD",     "D07",
+  "STUDY01", "BP40257-1001",      "2", "2007001", "CMATC3CD",    "D07A",
+  "STUDY01", "BP40257-1001",      "2", "2007001", "CMATC4CD",   "D07AA",
+  "STUDY01", "BP40257-1001",      "3", "2007001", "CMATC1CD",       "H",
+  "STUDY01", "BP40257-1001",      "3", "2007001", "CMATC2CD",     "H02",
+  "STUDY01", "BP40257-1001",      "3", "2007001", "CMATC3CD",    "H02A",
+  "STUDY01", "BP40257-1001",      "3", "2007001", "CMATC4CD",   "H02AB",
+  "STUDY01", "BP40257-1002",      "1", "2791596", "CMATC1CD",       "C",
+  "STUDY01", "BP40257-1002",      "1", "2791596", "CMATC2CD",     "C03",
+  "STUDY01", "BP40257-1002",      "1", "2791596", "CMATC3CD",    "C03D",
+  "STUDY01", "BP40257-1002",      "1", "2791596", "CMATC4CD",   "C03DA"
 )
 
 derive_vars_atc(cm, facm)