CAUTION: cache location has changed; This code has not been well tested.

data-raw/create_admiral_adlb.R

@@ -81,31 +81,4 @@ admiral_adlb
 #
 # Finally, save reduced ds
 #
-use_data(admiral_adlb, overwrite = TRUE)
-
-#
-#  TEST - is dataset identical to .... backup of unaltered dataset
-#
-e1 <- new.env()
-e2 <- new.env()
-load("data/admiral_adlb.rda", e1)
-
-# CHANGE to YOUR location of original dataset
-load("data-backup/admiral_adlb.rda", e2)
-
-# compare field names
-t <- tibble(e1 = names(e1$admiral_adlb), e2 = names(e2$admiral_adlb))
-t |> print(n = 111)
-
-identical(e1$admiral_adlb, e2$admiral_adlb)
-diffdf(e1$admiral_adlb, e2$admiral_adlb)
-
-## Capture diffdf to file
-
-capture.output(
-  diffdf(
-    compare = e1$admiral_adlb, base = e2$admiral_adlb,
-    keys = c("STUDYID", "DOMAIN", "USUBJID", "AVAL", "VISIT")
-  ),
-  file = "data-raw/diffdf_adlb_23SEPT"
-)
+usethis::use_data(admiral_adlb, overwrite = TRUE)

data-raw/create_admiral_adsl.R

@@ -1,14 +1,12 @@
 #  Create dataset:   data/admiral_adsl.rda
-#  This script:  create_admiral_adsl.R creates dataset data/admiral_adsl.rda.
+#  This script, create_admiral_adsl.R, creates dataset data/admiral_adsl.rda.
 #
-
 # Preliminary
 library(diffdf) # nolint
-
-
+#
 # nolint start: object_name_linter.
 # To clarify directories (can be removed)
-CACHE_DIR <- "~/.cache/R/admiral_templates_data/"
+CACHE_DIR <- "~/.config/cache/R/admiral_templates_data/"
 DATA_DIR <- "data-dir"
 DATA_RAW <- "data-raw"
 TEMPLATE_DIR <- "inst/templates/"
@@ -25,27 +23,6 @@ if (file.exists(THE_FILE)) file.remove(THE_FILE)
 # First, use template to create the R script (in data-raw/admiral_adlb.R).
 # Next, source this script and create the data (~/.cache/R/admiral_template_data/admiral_adlb.rda)
 # Finally, shorten this data (now ~ 1.2 MB) by selecting only certain USUBJID
-
-# OMIT -- orignal method  - OMIT
-if (FALSE) {
-  # ### original mehtod (method 1)
-  # # First,  create the R script (from a template)
-  adam_name <- "adlb"
-  save_path <- paste0("./data-raw/admiral_", adam_name, ".R")
-  use_ad_template(
-    adam_name = adam_name,
-    save_path = save_path,
-    open = FALSE,
-    overwrite = TRUE
-  )
-  # Second, source the script and save data in .cache
-  source("data-raw/admiral_adlb.R") # nolint
-  load("~/.cache/R/admiral_templates_data/adlb.rda")
-}
-
-#
-#
-# Instead, USE template, as recommened by Buzz
 #
 source(paste0(TEMPLATE_DIR, "/ad_adsl.R")) # nolint
 load(paste0(CACHE_DIR, "adsl.rda"))
@@ -54,25 +31,4 @@ admiral_adsl <- adsl
 #
 # Finally, save reduced ds
 #
-use_data(admiral_adsl, overwrite = TRUE)
-
-#
-#  TEST - is dataset identical to .... backup of unaltered dataset
-#
-e1 <- new.env()
-e2 <- new.env()
-load("data/admiral_adsl.rda", e1)
-
-# CHANGE to YOUR location of original dataset
-load("data-backup/admiral_adsl.rda", e2)
-
-
-identical(e1$admiral_adsl, e2$admiral_adsl)
-diffdf(compare = e1$admiral_adsl, base = e2$admiral_adsl, keys = c("STUDYID", "USUBJID"))
-capture.output(
-  diffdf(
-    compare = e1$admiral_adsl, base = e2$admiral_adsl,
-    keys = c("STUDYID", "USUBJID")
-  ),
-  file = "data-raw/diffdf_23SEPT"
-)
+usethis::use_data(admiral_adsl, overwrite = TRUE)