renv / codespaces update from pharmaverse/admiralci

.Rprofile

@@ -1,17 +1,48 @@
 # Set renv profile base on R version.
-renv_profile <- paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".")
-if (file.exists("./renv/profiles")) {
-  message("Using renv profile from `renv/profile` file.")
-  if (renv_profile %in% c("4.1", "4.2", "4.3")) {
-    message("Set renv profile to `", renv_profile, "`")
-    Sys.setenv("RENV_PROFILE" = renv_profile)
+.get_dependencies <- function(project_dir) {
+
+  admdev_loc <- find.package("admiraldev", lib.loc = .libPaths(), quiet = TRUE)
+  adm_dev_suggests <- if(length(admdev_loc) != 0) {
+    renv:::renv_dependencies_discover_description(admdev_loc, fields = c("Depends", "Imports", "LinkingTo", "Suggests"))
+  } else {
+    data.frame(Packages = character(0))
+  }
+  suggests_packages <- renv:::renv_dependencies_discover_description(project_dir, fields = "Suggests")
+
+  packages <- names(
+    renv:::renv_package_dependencies(
+      unique(c(
+        project_dir,
+        adm_dev_suggests[["Package"]],
+        suggests_packages[["Package"]],
+        c("staged.dependencies", "renv", "styler")
+      ))
+    )
+  )
+  packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test"))]
+}
+
+options(renv.snapshot.filter = .get_dependencies)
+
+.renv_profile <- paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".")
+if (!file.exists("./renv/profile")) {
+  if (.renv_profile %in% c("4.1", "4.2", "4.3")) {
+    message("Set renv profile to `", .renv_profile, "`")
+    Sys.setenv("RENV_PROFILE" = .renv_profile)
   } else {
-  message("This repository do not contains the renv profile for your R version.")
+    message("This repository do not contains the renv profile for your R version.")
   }
+} else {
+  message(
+    "Using renv profile from `renv/profile` file.\n",
+    "The `", readLines("./renv/profile"), "` profile will be used."
+  )
 }
 
 if (Sys.getenv("GITHUB_ACTIONS") != "") {
-  options(repos = c(CRAN = "https://cran.rstudio.com"))
-  Sys.setenv(RENV_AUTOLOADER_ENABLED=FALSE)
+  options(repos = c(CRAN = "https://packagemanager.posit.co/cran/latest"))
+  Sys.setenv("RENV_AUTOLOADER_ENABLED" = FALSE)
 }
-source("renv/activate.R")
+Sys.setenv("RENV_CONFIG_SANDBOX_ENABLED" = FALSE)
+Sys.setenv("RENV_CONFIG_AUTO_SNAPSHOT" = FALSE)
+# source("renv/activate.R")