#2126 unify_joined: update examples for derive_var_joined_exist_flag()

pharmaverse · Oct 10, 2023 · 0a1e272 · 0a1e272
1 parent e316861
commit 0a1e272
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Showing 2 changed files with 24 additions and 14 deletions.
diff --git a/R/derive_var_joined_exist_flag.R b/R/derive_var_joined_exist_flag.R
@@ -207,12 +207,13 @@
 #'
 #' derive_var_joined_exist_flag(
 #'   adae,
+#'   dataset_add = adae,
 #'   new_var = ALCOVFL,
 #'   by_vars = exprs(USUBJID),
 #'   join_vars = exprs(ACOVFL, ADY),
 #'   join_type = "all",
 #'   order = exprs(ADY),
-#'   filter = ADURN > 30 & ACOVFL.join == "Y" & ADY >= ADY.join - 7
+#'   filter_join = ADURN > 30 & ACOVFL.join == "Y" & ADY >= ADY.join - 7
 #' )
 #'
 #' # flag observations with AVALC == "Y" and AVALC == "Y" at one subsequent visit
@@ -231,12 +232,13 @@
 #'
 #' derive_var_joined_exist_flag(
 #'   data,
+#'   dataset_add = data,
 #'   by_vars = exprs(USUBJID),
 #'   new_var = CONFFL,
 #'   join_vars = exprs(AVALC, AVISITN),
 #'   join_type = "after",
 #'   order = exprs(AVISITN),
-#'   filter = AVALC == "Y" & AVALC.join == "Y" & AVISITN < AVISITN.join
+#'   filter_join = AVALC == "Y" & AVALC.join == "Y" & AVISITN < AVISITN.join
 #' )
 #'
 #' # select observations with AVALC == "CR", AVALC == "CR" at a subsequent visit,
@@ -261,13 +263,14 @@
 #'
 #' derive_var_joined_exist_flag(
 #'   data,
+#'   dataset_add = data,
 #'   by_vars = exprs(USUBJID),
 #'   join_vars = exprs(AVALC),
 #'   join_type = "after",
 #'   order = exprs(AVISITN),
 #'   new_var = CONFFL,
-#'   first_cond = AVALC.join == "CR",
-#'   filter = AVALC == "CR" & all(AVALC.join %in% c("CR", "NE")) &
+#'   first_cond_upper = AVALC.join == "CR",
+#'   filter_join = AVALC == "CR" & all(AVALC.join %in% c("CR", "NE")) &
 #'     count_vals(var = AVALC.join, val = "NE") <= 1
 #' )
 #'
@@ -294,13 +297,14 @@
 #'
 #' derive_var_joined_exist_flag(
 #'   data,
+#'   dataset_add = data,
 #'   by_vars = exprs(USUBJID),
 #'   join_vars = exprs(AVALC, ADY),
 #'   join_type = "after",
 #'   order = exprs(ADY),
 #'   new_var = CONFFL,
-#'   first_cond = AVALC.join %in% c("CR", "PR") & ADY.join - ADY >= 20,
-#'   filter = AVALC == "PR" &
+#'   first_cond_upper = AVALC.join %in% c("CR", "PR") & ADY.join - ADY >= 20,
+#'   filter_join = AVALC == "PR" &
 #'     all(AVALC.join %in% c("CR", "PR", "NE")) &
 #'     count_vals(var = AVALC.join, val = "NE") <= 1 &
 #'     (
@@ -327,13 +331,14 @@
 #'
 #' derive_var_joined_exist_flag(
 #'   data,
+#'   dataset_add = data,
 #'   by_vars = exprs(USUBJID),
 #'   new_var = CONFFL,
 #'   tmp_obs_nr_var = tmp_obs_nr,
 #'   join_vars = exprs(CRIT1FL),
 #'   join_type = "all",
 #'   order = exprs(AVISITN),
-#'   filter = CRIT1FL == "Y" & CRIT1FL.join == "Y" &
+#'   filter_join = CRIT1FL == "Y" & CRIT1FL.join == "Y" &
 #'     (tmp_obs_nr + 1 == tmp_obs_nr.join | tmp_obs_nr == max(tmp_obs_nr.join))
 #' )
 #'

diff --git a/man/derive_var_joined_exist_flag.Rd b/man/derive_var_joined_exist_flag.Rd