Skip to content

Commit

Permalink
acrB 171 -> acrB 717
Browse files Browse the repository at this point in the history
  • Loading branch information
@emarinier
emarinier committed Dec 16, 2024
1 parent de6c1b9 commit 2dd0085
Show file tree
Hide file tree
Showing 2 changed files with 1 addition and 2 deletions.
1 change: 0 additions & 1 deletion CHANGELOG.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,6 @@
* The Resfinder and Pointfinder databases now use FASTA record IDs with accession numbers (ex: `pmrA` -> `pmrA_1_CP055130.1`). StarAMR has been updated to support this, but database backwards compatibility is unlikely.
* The `genes_to_exclude` is affected by the above change and must now use gene IDs that exactly match the new FASTA record IDs with accession IDs.
* Removed ARG drug key entries with "None" or missing resistance.
* The ARG drug key for salmonella acrB 717 has changed to acrB 171.

# Version 0.10.0

Expand Down
2 changes: 1 addition & 1 deletion staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ salmonella parE 514 ciprofloxacin I/R,nalidixic acid
salmonella parE 521 ciprofloxacin I/R,nalidixic acid
salmonella 16S_rrsD 1065 spectinomycin
salmonella 16S_rrsD 1192 spectinomycin
salmonella acrB 171 azithromycin
salmonella acrB 717 azithromycin
escherichia_coli gyrA 51 ciprofloxacin I/R,nalidixic acid
escherichia_coli gyrA 67 ciprofloxacin I/R,nalidixic acid
escherichia_coli gyrA 81 ciprofloxacin I/R,nalidixic acid
Expand Down

0 comments on commit 2dd0085

Please sign in to comment.