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Profile plotting revisions and added user controls

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@chantelwetzel-noaa chantelwetzel-noaa released this 28 Jun 21:37
· 91 commits to main since this release

This release contains several key improvements:

  • Correct the end year specificational for final derived quantities reported in profile tables.
  • Correct the natural mortality parameter names in the summary tables created when profiling.
  • Add the ability to request specific subplots for profiles from the suite created using r4ss.
  • Add the ability to not include the management target and threshold lines on all plots.
  • Deprecate the use_prior_like input since r4ss now includes both with and without profile lines. It also includes adjustment for the 4-panel parameter plot to ensure the base model (blue point) falls on the profile line regardless of including the prior likelihood or not.
  • Revise profiling from base model parameter value across lower and higher parameter values to improve model convergence of the profiles.