Merge pull request #43 from pfmc-assessments/style-doc-code

Style code and document

R/check_profile_range.R

@@ -51,7 +51,7 @@ check_profile_range <- function(mydir, model_settings) {
     }
     step_size <- profile_details[["step_size"]]
 
-    if((max(range) - min(range)) < step_size) {
+    if ((max(range) - min(range)) < step_size) {
       cli::cli_abort(
         "The step size of {step_size} appears to be set too large to
         profile over {para} from value of {range[1]} to {range[2]}."
@@ -81,7 +81,7 @@ check_profile_range <- function(mydir, model_settings) {
     if (est %in% vec) {
       vec <- vec[!vec == est]
     }
-    if(model_settings[["verbose"]]) {
+    if (model_settings[["verbose"]]) {
       cli::cli_inform(
         "Profiling over {para} across values of {sort(vec)}."
       )

R/get_settings.R

@@ -14,9 +14,10 @@
 #'
 #' @examples
 #' \dontrun{
-#'   get_settings(
-#'     mydir = "directory",
-#'     settings = list("Njitter" = 10))
+#' get_settings(
+#'   mydir = "directory",
+#'   settings = list("Njitter" = 10)
+#' )
 #' }
 #'
 get_settings <- function(mydir = NULL, settings = NULL) {

R/get_settings_profile.R

@@ -90,7 +90,8 @@ get_settings_profile <- function(parameters = c("NatM_uniform_Fem_GP_1", "SR_BH_
     cli::cli_abort(
       "Input vectors do match in length. There were {length(parameters)} parameters,
        {length(low)} lower bounds, {length(high)} high bounds, {length(step_size)}
-        step sizes, and {length(param_space)} parameter spaces specified.")
+        step sizes, and {length(param_space)} parameter spaces specified."
+    )
   }
 
   if (lifecycle::is_present(use_prior_like)) {

R/run_profile.R

@@ -129,7 +129,7 @@ run_profile <- function(mydir, model_settings, para) {
   }
   step_size <- model_settings[["profile_details"]][["step_size"]]
 
-  if((max(range) - min(range)) < step_size) {
+  if ((max(range) - min(range)) < step_size) {
     cli::cli_abort(
       "The step size of {step_size} appears to be set too large to
         profile over {para} from value of {range[1]} to {range[2]}."
@@ -161,7 +161,7 @@ run_profile <- function(mydir, model_settings, para) {
   }
   num <- sort(vec, index.return = TRUE)[["ix"]]
 
-  if(model_settings[["verbose"]]) {
+  if (model_settings[["verbose"]]) {
     cli::cli_inform(
       "Profiling over {para} across values of {sort(vec)}."
     )