GitHub - pfiziev/degradome: Degradome analysis scripts

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
HeLa		HeLa
U87		U87
U87_DroshaKD		U87_DroshaKD
005filter_reads_with_multiple_hits.py		005filter_reads_with_multiple_hits.py
007resolve_annotation_conflicts.py		007resolve_annotation_conflicts.py
010determine_read_type.py		010determine_read_type.py
012read_stats.py		012read_stats.py
015map_hits_to_regions.py		015map_hits_to_regions.py
020hit_statistics.py		020hit_statistics.py
030plot_length_distribution.py		030plot_length_distribution.py
040get_regions_with_peaks.py		040get_regions_with_peaks.py
047overlap_regions_with_small_RNA_peaks.py		047overlap_regions_with_small_RNA_peaks.py
050check_peak_regions_for_known_snoRNAs.py		050check_peak_regions_for_known_snoRNAs.py
README		README
find_regions_with_peaks_shared.py		find_regions_with_peaks_shared.py
run.sh		run.sh
utils.py		utils.py

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The HeLa reads are reverse-complemented. Their reverse complement must be used in the analysis instead. trim_reads.py converts them correctly.
peakData.10.hg19.U87.both.unique.lax are the small RNA peaks from Chris.