Precomputed CELLEX datasets

You can download and use these precomputed CELLEX expression specificity matrices as input to CELLECT. (Whereever relevant, mouse genes have been mapped to human ortholog genes.) See the CELLEX tutorials to generate expression specificity matrices for your own expression data set.

Precomputed CELLEX datasets

Dataset name	File	Reference	Notes/Description
Tabula Muris	tabula_muris.mu.csv.gz	The Tabula Muris Consortium, Nature 2018	115 cell-types across 18 tissues. Smart-seq data only.
Mousebrain	mousebrain.mu.csv.gz	Zeisel, Cell 2018	265 cell-types across 19 anatomical regions
MOCA	moca_main_trajectory.mu.csv.gz moca_sub_trajectory.mu.csv.gz	Cao, Nature 2019	Mouse organogenesis cell atlas. 10 main trajectories and 56 sub-trajectories. See also MOCA website
HYP - Romanov2017	romanov2017.mu.csv.gz	Romanov, Nature Neuroscience 2016	60 cell-types across hypothalamus
HYP - Chen2017	chen2017.mu.csv.gz	Chen, Cell Reports 2017	45 cell-types across hypothalamus
HYP VMH - Kim2019	kimVMH2019_smartseq.mu.csv.gz	Kim, Cell 2019	48 cell-types from the ventrolateral subdivision of the ventromedial hypothalamus. Smart-seq data only.
HYP LHA - Mickelsen2019	mikkelsen2019.mu.csv.gz	Mikkelsen, Nature Neuroscience 2019	43 cell-types from lateral hypothalamic area
HYP POA - Moffitt2018	moffitt2018.mu.csv.gz	Moffitt, Science 2018	87 cell-types from hypothalamic preoptic region
HYP ARCME - Campbell2017	campbell2017_lvl2.mu.csv.gz	Campbell, Nature Neuroscience 2017	65 cell-types from hypothalamus median eminence / arcuate nucleus complex