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added pkgdown #36

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Jan 29, 2024
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5 changes: 4 additions & 1 deletion .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,7 @@
^\.Rproj\.user$
^LICENSE\.md$
^\.github$
^README\.Rmd$
^README\.Rmd$
^_pkgdown\.yml$
^docs$
^pkgdown$
1 change: 1 addition & 0 deletions .github/.gitignore
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@@ -0,0 +1 @@
*.html
48 changes: 48 additions & 0 deletions .github/workflows/pkgdown.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:

name: pkgdown

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs
2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,5 @@
.Rhistory
.RData
.Ruserdata
docs
pkgdown
102 changes: 51 additions & 51 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,51 +1,51 @@
Package: ECOTOXr
Type: Package
Title: Download and Extract Data from US EPA's ECOTOX Database
Version: 1.0.9
Date: 2024-01-07
Authors@R: c(person("Pepijn", "de Vries", role = c("aut", "cre", "dtc"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-7961-6646")))
Author:
Pepijn de Vries [aut, cre, dtc] (0000-0002-7961-6646)
Maintainer: Pepijn de Vries <[email protected]>
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database.
Depends:
R (>= 4.1.0),
RSQLite (>= 2.3.4)
Imports:
crayon (>= 1.5.2),
dbplyr (>= 2.4.0),
dplyr (>= 1.1.4),
httr2 (>= 1.0.0),
jsonlite (>= 1.8.8),
lifecycle (>= 1.0.4),
purrr (>= 1.0.2),
rappdirs (>= 0.3.3),
readr (>= 2.1.4),
readxl (>= 1.4.3),
rlang (>= 1.1.2),
rvest (>= 1.0.3),
stringr (>= 1.5.1),
tibble (>= 3.2.1),
tidyr (>= 1.3.0),
tidyselect (>= 1.2.0),
utils
Suggests:
DBI,
standartox,
testthat (>= 3.0.0),
webchem
URL: https://github.com/pepijn-devries/ECOTOXr
BugReports: https://github.com/pepijn-devries/ECOTOXr/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Package: ECOTOXr
Type: Package
Title: Download and Extract Data from US EPA's ECOTOX Database
Version: 1.0.9
Date: 2024-01-07
Authors@R: c(person("Pepijn", "de Vries", role = c("aut", "cre", "dtc"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-7961-6646")))
Author:
Pepijn de Vries [aut, cre, dtc] (0000-0002-7961-6646)
Maintainer: Pepijn de Vries <[email protected]>
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database.
Depends:
R (>= 4.1.0),
RSQLite (>= 2.3.4)
Imports:
crayon (>= 1.5.2),
dbplyr (>= 2.4.0),
dplyr (>= 1.1.4),
httr2 (>= 1.0.0),
jsonlite (>= 1.8.8),
lifecycle (>= 1.0.4),
purrr (>= 1.0.2),
rappdirs (>= 0.3.3),
readr (>= 2.1.4),
readxl (>= 1.4.3),
rlang (>= 1.1.2),
rvest (>= 1.0.3),
stringr (>= 1.5.1),
tibble (>= 3.2.1),
tidyr (>= 1.3.0),
tidyselect (>= 1.2.0),
utils
Suggests:
DBI,
standartox,
testthat (>= 3.0.0),
webchem
URL: https://github.com/pepijn-devries/ECOTOXr, https://pepijn-devries.github.io/ECOTOXr/
BugReports: https://github.com/pepijn-devries/ECOTOXr/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
4 changes: 4 additions & 0 deletions _pkgdown.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
url: https://pepijn-devries.github.io/ECOTOXr/
template:
bootstrap: 5

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