Merge pull request #36 from pepijn-devries/work-in-progress

added pkgdown

.Rbuildignore

@@ -2,4 +2,7 @@
 ^\.Rproj\.user$
 ^LICENSE\.md$
 ^\.github$
-^README\.Rmd$
+^README\.Rmd$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -2,3 +2,5 @@
 .Rhistory
 .RData
 .Ruserdata
+docs
+pkgdown

DESCRIPTION

@@ -1,51 +1,51 @@
-Package: ECOTOXr
-Type: Package
-Title: Download and Extract Data from US EPA's ECOTOX Database
-Version: 1.0.9
-Date: 2024-01-07
-Authors@R: c(person("Pepijn", "de Vries", role = c("aut", "cre", "dtc"),
-    email = "[email protected]",
-    comment = c(ORCID = "0000-0002-7961-6646")))
-Author:
-    Pepijn de Vries [aut, cre, dtc] (0000-0002-7961-6646)
-Maintainer: Pepijn de Vries <[email protected]>
-Description: The US EPA ECOTOX database is a freely available database
-    with a treasure of aquatic and terrestrial ecotoxicological data.
-    As the online search interface doesn't come with an API, this
-    package provides the means to easily access and search the database
-    in R. To this end, all raw tables are downloaded from the EPA website
-    and stored in a local SQLite database.
-Depends:
-    R (>= 4.1.0),
-    RSQLite (>= 2.3.4)
-Imports:
-    crayon (>= 1.5.2),
-    dbplyr (>= 2.4.0),
-    dplyr (>= 1.1.4),
-    httr2 (>= 1.0.0),
-    jsonlite (>= 1.8.8),
-    lifecycle (>= 1.0.4),
-    purrr (>= 1.0.2),
-    rappdirs (>= 0.3.3),
-    readr (>= 2.1.4),
-    readxl (>= 1.4.3),
-    rlang (>= 1.1.2),
-    rvest (>= 1.0.3),
-    stringr (>= 1.5.1),
-    tibble (>= 3.2.1),
-    tidyr (>= 1.3.0),
-    tidyselect (>= 1.2.0),
-    utils
-Suggests:
-    DBI,
-    standartox,
-    testthat (>= 3.0.0),
-    webchem
-URL: https://github.com/pepijn-devries/ECOTOXr
-BugReports: https://github.com/pepijn-devries/ECOTOXr/issues
-License: GPL (>= 3)
-Encoding: UTF-8
-LazyData: true
-RoxygenNote: 7.2.3
-Config/testthat/edition: 3
-Roxygen: list(markdown = TRUE)
+Package: ECOTOXr
+Type: Package
+Title: Download and Extract Data from US EPA's ECOTOX Database
+Version: 1.0.9
+Date: 2024-01-07
+Authors@R: c(person("Pepijn", "de Vries", role = c("aut", "cre", "dtc"),
+    email = "[email protected]",
+    comment = c(ORCID = "0000-0002-7961-6646")))
+Author:
+    Pepijn de Vries [aut, cre, dtc] (0000-0002-7961-6646)
+Maintainer: Pepijn de Vries <[email protected]>
+Description: The US EPA ECOTOX database is a freely available database
+    with a treasure of aquatic and terrestrial ecotoxicological data.
+    As the online search interface doesn't come with an API, this
+    package provides the means to easily access and search the database
+    in R. To this end, all raw tables are downloaded from the EPA website
+    and stored in a local SQLite database.
+Depends:
+    R (>= 4.1.0),
+    RSQLite (>= 2.3.4)
+Imports:
+    crayon (>= 1.5.2),
+    dbplyr (>= 2.4.0),
+    dplyr (>= 1.1.4),
+    httr2 (>= 1.0.0),
+    jsonlite (>= 1.8.8),
+    lifecycle (>= 1.0.4),
+    purrr (>= 1.0.2),
+    rappdirs (>= 0.3.3),
+    readr (>= 2.1.4),
+    readxl (>= 1.4.3),
+    rlang (>= 1.1.2),
+    rvest (>= 1.0.3),
+    stringr (>= 1.5.1),
+    tibble (>= 3.2.1),
+    tidyr (>= 1.3.0),
+    tidyselect (>= 1.2.0),
+    utils
+Suggests:
+    DBI,
+    standartox,
+    testthat (>= 3.0.0),
+    webchem
+URL: https://github.com/pepijn-devries/ECOTOXr, https://pepijn-devries.github.io/ECOTOXr/
+BugReports: https://github.com/pepijn-devries/ECOTOXr/issues
+License: GPL (>= 3)
+Encoding: UTF-8
+LazyData: true
+RoxygenNote: 7.2.3
+Config/testthat/edition: 3
+Roxygen: list(markdown = TRUE)

_pkgdown.yml

@@ -0,0 +1,4 @@
+url: https://pepijn-devries.github.io/ECOTOXr/
+template:
+  bootstrap: 5
+