Add regression test based on 1 rxn, axisymmetric torch case

test/inputs/lomach.torch.reacting.ini

@@ -0,0 +1,226 @@
+# choice of solver
+[solver]
+type = cycle-avg-joule-coupled
+
+
+[cycle-avg-joule-coupled]
+max-iters = 10
+solve-em-every-n = 50
+axisymmetric = True
+input-power = 18000.0
+initial-input-power = 18000.0
+plasma-solver = lomach
+fixed-conductivity = False
+
+[loMach]
+axisymmetric = true
+mesh = ./meshes/torch-flow-refine.msh
+ref_levels = 0
+order = 3
+outputFreq = 10
+timingFreq = 1
+openSystem = True
+flow-solver = tomboulides
+thermo-solver = reacting-flow
+turb-model = algebraic-rans
+algebraic-rans/max-mixing-length = 0.01
+algebraic-rans/von-karman = 0.41
+algebraic-rans/filter = True
+algebraic-rans/filter-order = 1
+
+[loMach/reacting]
+eddy-Pr = 100.0
+eddy-Sc = 100.0
+sub-steps = 10
+# linear-solver-verbosity = 1
+
+[loMach/tomboulides]
+numerical-integ = false
+
+#[averaging]
+#enableContinuation = False
+#restartRMS = True
+#saveMeanHist = True
+#startIter = 2250000
+#sampleFreq = 10
+
+[spongeMultiplier]
+plane = True
+planeNormal = '0 1 0'
+planePoint = '0 0.45 0'
+planeWidth = 0.01
+planeMult = 10.0
+
+
+[io]
+outdirBase = output-torch
+enableRestart = True
+restartMode = singleFileReadWrite
+#restartFromLTE = True
+
+# Set bdfOrder = 1 for restart testing purposes
+[time]
+enableConstantTimestep = True
+dt_fixed = 5e-7
+integrator = curlcurl
+bdfOrder = 1
+maxSolverIteration = 200
+solverRelTolerance = 1.0e-12
+
+[boundaryConditions]
+numWalls = 4 # 3
+numInlets = 1
+numOutlets = 1 # 2
+
+# NB: patch = 2 is the axis
+
+[boundaryConditions/wall1]
+# Bottom wall
+patch = 3
+type = viscous_isothermal
+temperature = 300.0
+
+[boundaryConditions/wall2]
+# Top wall
+patch = 7
+type = viscous_isothermal
+temperature = 300.0
+
+[boundaryConditions/wall3]
+# Torch outer wall
+patch = 8
+type = viscous_isothermal
+temperature = 300.0
+
+[boundaryConditions/inlet1]
+patch = 4
+type = uniform
+velocity = '0.0 0.706'
+swirl = 24.0
+temperature = 300.0
+
+[boundaryConditions/outlet1]
+patch = 6
+type = uniform
+pressure = 0.0
+
+[boundaryConditions/wall4]
+patch = 5
+type = viscous_isothermal
+temperature = 300.0
+
+#[boundaryConditions/outlet2]
+#patch = 5
+#type = uniform
+#pressure = 0.0
+
+
+###########################################
+#        PLASMA MODELS
+###########################################
+[plasma_models]
+ambipolar = True
+two_temperature = False
+gas_model = perfect_mixture
+chemistry_model = 'mass_action_law'
+transport_model = argon_mixture
+argon_ternary/third_order_thermal_conductivity = True
+
+[plasma_models]
+radiation_model = net_emission
+
+[plasma_models/radiation_model/net_emission]
+coefficient = tabulated
+tabulated/filename = ./rad-data/nec_sample.0.h5
+tabulated/x_log = False
+tabulated/f_log = False
+tabulated/order = 1
+
+[atoms]
+numAtoms = 2
+
+[atoms/atom1]
+name = 'Ar'
+mass = 39.948e-3 # [kg/mol]
+
+[atoms/atom2]
+name = 'E'
+mass = 5.48579908782496e-7 # [kg/mol]
+
+[species]
+numSpecies = 3
+background_index = 3
+
+[species/species1]
+name = 'Ar.+1'
+composition = '{Ar : 1, E : -1}'
+formation_energy = 1520571.3883  # [J/mol]  = 15.7596119 eV # Ionization energy (Not sure what the units should be here)
+level_degeneracy = 4
+initialMassFraction = 0.0
+perfect_mixture/constant_molar_cv = 1.5
+perfect_mixture/constant_molar_cp = 2.5
+
+[species/species2]
+name = 'E'
+composition = '{E : 1}'
+formation_energy = 0.0
+level_degeneracy = 1
+initialMassFraction = 0.0
+initialElectronTemperature = 298.15
+# if gas_model is perfect_mixture, requires heat capacities from input.
+# molar heat capacities in unit of universal gas constant.
+perfect_mixture/constant_molar_cv = 1.5
+perfect_mixture/constant_molar_cp = 2.5
+
+[species/species3]
+name = 'Ar'
+composition = '{Ar : 1}'
+formation_energy = 0.0
+level_degeneracy = 1
+initialMassFraction = 1.0
+perfect_mixture/constant_molar_cv = 1.5
+perfect_mixture/constant_molar_cp = 2.5
+
+[reactions]
+number_of_reactions = 2
+minimum_chemistry_temperature = 2000.0
+
+[reactions/reaction1]
+equation = 'Ar + E => Ar.+1 + 2 E'
+reaction_energy = 1520571.3883 # [J/mol]
+reactant_stoichiometry = '0 1 1'
+product_stoichiometry = '1 2 0'
+model = arrhenius
+arrhenius/A = 74072.331348 #74072.331348
+arrhenius/b = 1.511
+arrhenius/E = 1176329.772504 # [J/mol]
+detailed_balance = False
+
+[reactions/reaction2]
+equation = 'Ar.+1 + 2 E => Ar + E'
+reaction_energy = -1520571.3883 # [J/mol]
+reactant_stoichiometry = '1 2 0'
+product_stoichiometry = '0 1 1'
+model = arrhenius
+arrhenius/A = 34126.47475259143 #34126.47475259143
+arrhenius/b = 0.368
+arrhenius/E = -377725.908714
+detailed_balance = False
+
+#---------------------------------------
+# Controls for EM-only solver
+# mesh = ../mesh/torch-em-coarse2.msh
+# order       =  3                 # FE order (polynomial degree)
+#---------------------------------------
+[em]
+mesh = ./meshes/torch-em-NEWCOIL.msh
+order       =  2                 # FE order (polynomial degree)
+ref_levels  =  0
+max_iter    =  1000              # max number of iterations
+rtol        =  1.0e-12           # solver relative tolerance
+atol        =  1.0e-18           # solver absolute tolerance
+top_only    =  false             # run current through top branch only
+bot_only    =  false             # run current through bottom branch only
+current_amplitude = 4e5          # run 1 of heating # A/m^2 (with reactions
+current_frequency = 6e6          # 1/s
+permeability = 1.25663706e-6     # m * kg / s^2 / A^2

test/meshes/.gitattributes

@@ -1,3 +1,4 @@
 *.msh filter=lfs diff=lfs merge=lfs -text
 torch-flow-refine.msh filter=lfs diff=lfs merge=lfs -text
 torch-em-coarse2.msh filter=lfs diff=lfs merge=lfs -text
+torch-em-NEWCOIL.msh filter=lfs diff=lfs merge=lfs -text

test/reactFlow-singleRx.test

@@ -4,6 +4,7 @@
 TEST="singleReaction"
 RUNFILE="inputs/input.reactSingleRx.ini"
 RUNFILE_STIFF="inputs/input.reactStiffRx.ini"
+RUNFILE_TORCH="inputs/lomach.torch.reacting.ini"
 EXE="../src/tps"
 RESTART="ref_solns/reactSingleRx/restart_output.sol.h5"
 
@@ -13,6 +14,10 @@ setup() {
 
     SOLN_FILE_STIFF=restart_output-stiff.sol.h5
     REF_FILE_STIFF=ref_solns/reactSingleRx/restart_output-stiff.sol.h5
+
+    RESTRT_FILE_TORCH=ref_solns/reactSingleRx/restart_output-torch.sol.IC.h5
+    SOLN_FILE_TORCH=restart_output-torch.sol.h5
+    REF_FILE_TORCH=ref_solns/reactSingleRx/restart_output-torch.sol.10.h5
 }
 
 @test "[$TEST] check for input file $RUNFILE" {
@@ -49,3 +54,24 @@ setup() {
     h5diff -r --relative=1e-12 $SOLN_FILE_STIFF $REF_FILE_STIFF /species
     h5diff -r --relative=1e-12 $SOLN_FILE_STIFF $REF_FILE_STIFF /temperature/temperature
 }
+
+@test "[$TEST] check for input file $RUNFILE_TORCH" {
+    test -s $RUNFILE
+    rm -rf $SOLN_FILE_TORCH
+    cp $RESTRT_FILE_TORCH $SOLN_FILE_TORCH
+}
+
+@test "[$TEST] run tps with input -> $RUNFILE_TORCH" {
+    rm -rf output-torch
+    $EXE --runFile $RUNFILE_TORCH
+    test -s $SOLN_FILE_TORCH
+}
+
+@test "[$TEST] verify tps output with input -> $RUNFILE_TORCH" {
+    test -s $SOLN_FILE_TORCH
+    test -s $REF_FILE_TORCH
+    h5diff -r --relative=1e-12 $SOLN_FILE_TORCH $REF_FILE_TORCH /velocity
+    h5diff -r --relative=1e-12 $SOLN_FILE_TORCH $REF_FILE_TORCH /swirl
+    h5diff -r --relative=1e-12 $SOLN_FILE_TORCH $REF_FILE_TORCH /species
+    h5diff -r --relative=1e-12 $SOLN_FILE_TORCH $REF_FILE_TORCH /temperature/temperature
+}

test/ref_solns/reactSingleRx/.gitattributes

@@ -0,0 +1,2 @@
+restart_output-torch.sol.IC.h5 filter=lfs diff=lfs merge=lfs -text
+restart_output-torch.sol.10.h5 filter=lfs diff=lfs merge=lfs -text