added option exp_dataset_alpha to sim pipeline. This option allows

to plot experimental data with an alpha level.

CHANGELOG

@@ -6,8 +6,10 @@ Website: https://pdp10.github.io/sbpipe/
 
 ### CHANGELOG
 
-v3.31.0 (Mars)
+v3.32.0 (Mars)
 
+- added option `exp_dataset_alpha` to `sim` pipeline. This option allows to plot experimental
+data with an alpha level.
 - data analysis for `sim` pipeline is scalable.
 - improved yaml files for installing SBpipe using conda. SBpipe is now tested on Python 2.7 and 3.6.
 - added transparencies and improved simulation plots combined with data set.

VERSION

@@ -1 +1 @@
-3.31.0
+3.32.0

docs/build/html/_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2017 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2016 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -52,8 +52,6 @@ div.sphinxsidebar {
     width: 230px;
     margin-left: -100%;
     font-size: 90%;
-    word-wrap: break-word;
-    overflow-wrap : break-word;
 }
 
 div.sphinxsidebar ul {
@@ -85,6 +83,10 @@ div.sphinxsidebar #searchbox input[type="text"] {
     width: 170px;
 }
 
+div.sphinxsidebar #searchbox input[type="submit"] {
+    width: 30px;
+}
+
 img {
     border: 0;
     max-width: 100%;
@@ -122,8 +124,6 @@ ul.keywordmatches li.goodmatch a {
 
 table.contentstable {
     width: 90%;
-    margin-left: auto;
-    margin-right: auto;
 }
 
 table.contentstable p.biglink {
@@ -151,14 +151,9 @@ table.indextable td {
     vertical-align: top;
 }
 
-table.indextable ul {
+table.indextable dl, table.indextable dd {
     margin-top: 0;
     margin-bottom: 0;
-    list-style-type: none;
-}
-
-table.indextable > tbody > tr > td > ul {
-    padding-left: 0em;
 }
 
 table.indextable tr.pcap {
@@ -190,22 +185,8 @@ div.genindex-jumpbox {
     padding: 0.4em;
 }
 
-/* -- domain module index --------------------------------------------------- */
-
-table.modindextable td {
-    padding: 2px;
-    border-collapse: collapse;
-}
-
 /* -- general body styles --------------------------------------------------- */
 
-div.body p, div.body dd, div.body li, div.body blockquote {
-    -moz-hyphens: auto;
-    -ms-hyphens: auto;
-    -webkit-hyphens: auto;
-    hyphens: auto;
-}
-
 a.headerlink {
     visibility: hidden;
 }
@@ -231,6 +212,10 @@ div.body td {
     text-align: left;
 }
 
+.field-list ul {
+    padding-left: 1em;
+}
+
 .first {
     margin-top: 0 !important;
 }
@@ -347,6 +332,10 @@ table.docutils td, table.docutils th {
     border-bottom: 1px solid #aaa;
 }
 
+table.field-list td, table.field-list th {
+    border: 0 !important;
+}
+
 table.footnote td, table.footnote th {
     border: 0 !important;
 }
@@ -383,20 +372,6 @@ div.figure p.caption span.caption-number {
 div.figure p.caption span.caption-text {
 }
 
-/* -- field list styles ----------------------------------------------------- */
-
-table.field-list td, table.field-list th {
-    border: 0 !important;
-}
-
-.field-list ul {
-    margin: 0;
-    padding-left: 1em;
-}
-
-.field-list p {
-    margin: 0;
-}
 
 /* -- other body styles ----------------------------------------------------- */
 
@@ -447,6 +422,15 @@ dl.glossary dt {
     font-size: 1.1em;
 }
 
+.field-list ul {
+    margin: 0;
+    padding-left: 1em;
+}
+
+.field-list p {
+    margin: 0;
+}
+
 .optional {
     font-size: 1.3em;
 }
@@ -505,13 +489,6 @@ pre {
     overflow-y: hidden;  /* fixes display issues on Chrome browsers */
 }
 
-span.pre {
-    -moz-hyphens: none;
-    -ms-hyphens: none;
-    -webkit-hyphens: none;
-    hyphens: none;
-}
-
 td.linenos pre {
     padding: 5px 0px;
     border: 0;
@@ -603,16 +580,6 @@ span.eqno {
     float: right;
 }
 
-span.eqno a.headerlink {
-    position: relative;
-    left: 0px;
-    z-index: 1;
-}
-
-div.math:hover a.headerlink {
-    visibility: visible;
-}
-
 /* -- printout stylesheet --------------------------------------------------- */
 
 @media print {

docs/build/html/_static/classic.css

@@ -1,10 +1,10 @@
 /*
- * classic.css_t
+ * default.css_t
  * ~~~~~~~~~~~~~
  *
- * Sphinx stylesheet -- classic theme.
+ * Sphinx stylesheet -- default theme.
  *
- * :copyright: Copyright 2007-2017 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2016 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

docs/build/html/_static/doctools.js

@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for all documentation.
  *
- * :copyright: Copyright 2007-2017 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2016 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -124,7 +124,6 @@ var Documentation = {
     this.fixFirefoxAnchorBug();
     this.highlightSearchWords();
     this.initIndexTable();
-
   },
 
   /**
@@ -253,29 +252,6 @@ var Documentation = {
     });
     var url = parts.join('/');
     return path.substring(url.lastIndexOf('/') + 1, path.length - 1);
-  },
-
-  initOnKeyListeners: function() {
-    $(document).keyup(function(event) {
-      var activeElementType = document.activeElement.tagName;
-      // don't navigate when in search box or textarea
-      if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT') {
-        switch (event.keyCode) {
-          case 37: // left
-            var prevHref = $('link[rel="prev"]').prop('href');
-            if (prevHref) {
-              window.location.href = prevHref;
-              return false;
-            }
-          case 39: // right
-            var nextHref = $('link[rel="next"]').prop('href');
-            if (nextHref) {
-              window.location.href = nextHref;
-              return false;
-            }
-        }
-      }
-    });
   }
 };
 
@@ -284,4 +260,4 @@ _ = Documentation.gettext;
 
 $(document).ready(function() {
   Documentation.init();
-});
+});