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'SN:Z' and 'SO:i' tags for segments/nodes #328

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songbowang125 opened this issue Sep 5, 2023 · 1 comment
Open

'SN:Z' and 'SO:i' tags for segments/nodes #328

songbowang125 opened this issue Sep 5, 2023 · 1 comment

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@songbowang125
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Hi,
I am using pggb to build my own pan-graphs and pggb outputs a well-constructed graph. However, I find that pggb does not output the 'SN:Z' and 'SO:i' tags for segments/nodes.
'SN:Z' refers to the 'Name of stable sequence from which the segment is derived'.
'SO:i' refers to the 'Offset on the stable sequence'.
The two tags are very helpful for understanding the graph better. Is there any parameters to output the two tags?

Thanks

@cgroza
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cgroza commented Oct 18, 2023

These are tags from minigraph.
You could reconstruct this information using a combination of odgi commands I think.

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