Merge overlapping/contiguous ranges to visit in query_transitive to strongly improve performance
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AndreaGuarracino
changed the title
query_transitive to strongly improve performance
AndreaGuarracino
changed the title
query_transitive to strongly improve performancequery_transitive to strongly improve performance
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In yeast, this results in an improvement of about 2 orders of magnitude in execution time and 1 order of magnitude in memory usage, with equivalent results (identical results after
bedtools sort | bedtools mergethem).Essentially, we avoid repeating lots of work.