Merge pull request #390 from njorocs/KHP3-3324-Rebase

Added defaulter tracing in datatools. Added reason_not_contacted colu…

omod/src/main/resources/sql/DDL.sql

@@ -1440,6 +1440,7 @@ missed_appointment_date DATE,
 reason_for_missed_appointment INT(11),
 non_coded_missed_appointment_reason VARCHAR(100),
 tracing_outcome INT(11),
+reason_not_contacted INT(11),
 attempt_number INT(11),
 is_final_trace INT(11),
 true_status INT(11),

omod/src/main/resources/sql/DML.sql

@@ -3084,6 +3084,7 @@ missed_appointment_date,
 reason_for_missed_appointment,
 non_coded_missed_appointment_reason,
 tracing_outcome,
+reason_not_contacted,
 attempt_number,
 is_final_trace,
 true_status,
@@ -3100,6 +3101,7 @@ max(if(o.concept_id=164093,date(o.value_datetime),null)) as missed_appointment_d
 max(if(o.concept_id = 1801, o.value_coded, null )) as reason_for_missed_appointment,
 max(if(o.concept_id = 163513, o.value_text, "" )) as non_coded_missed_appointment_reason,
 max(if(o.concept_id = 160721, o.value_coded, null )) as tracing_outcome,
+max(if(o.concept_id = 166541, o.value_coded, null )) as reason_not_contacted,
 max(if(o.concept_id = 1639, value_numeric, "" )) as attempt_number,
 max(if(o.concept_id = 163725, o.value_coded, "" )) as is_final_trace,
 max(if(o.concept_id = 160433, o.value_coded, "" )) as true_status,
@@ -3111,7 +3113,7 @@ if(max(o.date_created) > min(e.date_created),max(o.date_created),NULL) as date_l
 from encounter e
 	inner join person p on p.person_id=e.patient_id and p.voided=0
 	inner join form f on f.form_id=e.form_id and f.uuid in ("a1a62d1e-2def-11e9-b210-d663bd873d93")
-inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093,1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526) and o.voided=0
+inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093,1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526,166541) and o.voided=0
 where e.voided=0
 group by e.encounter_id;
 SELECT "Completed processing CCC defaulter tracing forms", CONCAT("Time: ", NOW());

omod/src/main/resources/sql/DataTools.sql

@@ -2717,6 +2717,77 @@ ALTER TABLE kenyaemr_datatools.overdose_reporting ADD INDEX(naloxone_provided);
 ALTER TABLE kenyaemr_datatools.overdose_reporting ADD INDEX(outcome);
 SELECT "Successfully created overdose_reporting table";
 
+-- Create table ccc_defaulter_tracing
+create table kenyaemr_datatools.ccc_defaulter_tracing as
+select uuid,
+       provider,
+       patient_id,
+       visit_id,
+       visit_date,
+       location_id,
+       encounter_id,
+       (case f.tracing_type
+            when 1650 then 'Client Called'
+            when 164965 then 'Physical Tracing'
+            when 161642 then 'Treatment supporter' end)                                as tracing_type,
+       case f.tracing_outcome when 1267 then 'Contact' when 1118 then 'No Contact' end as tracing_outcome,
+       missed_appointment_date,
+       (case f.reason_for_missed_appointment
+            when 165609 then 'Client has covid-19 infection'
+            when 165610 then 'COVID-19 restrictions'
+            when 164407 then 'Client refilled drugs from another facility'
+            when 159367 then 'Client has enough drugs'
+            when 162619 then 'Client travelled'
+            when 126240 then 'Client could not get an off from work/school'
+            when 160583 then 'Client is sharing drugs with partner'
+            when 162192 then 'Client forgot clinic dates'
+            when 164349 then 'Client stopped medications'
+            when 1654 then 'Client sick at home/admitted'
+            when 5622
+                then 'Other' end)                                                      as reason_for_missed_appointment,
+       non_coded_missed_appointment_reason,
+       (case f.reason_not_contacted
+            when 166538 then 'No locator information'
+            when 165075 then 'Inaccurate locator information'
+            when 160034 then 'Died'
+            when 1302 then 'Calls not going through'
+            when 1567 then 'Not picking calls'
+            when 160415 then 'Migrated from reported location'
+            when 1706 then 'Not found at home'
+            when 5622 then 'Other' end)                                                as reason_not_contacted,
+       attempt_number,
+       (case f.is_final_trace when 1267 then 'Yes' when 163339 then 'No' end)          as is_final_trace,
+       (case f.true_status
+            when 160432 then 'Dead'
+            when 1693 then 'Receiving ART from another clinic/Transferred'
+            when 160037 then 'Still in care at CCC'
+            when 5240 then 'Lost to follow up'
+            when 164435 then 'Stopped treatment'
+            when 142917 then 'Other' end)                                                as true_status,
+       (case f.cause_of_death
+            when 165609 then 'Infection due to COVID-19'
+            when 162574 then 'Death related to HIV infection'
+            when 116030 then 'Cancer'
+            when 164500 then 'TB'
+            when 151522 then 'Other infectious and parasitic diseases'
+            when 133481 then 'Natural cause'
+            when 1603 then 'Unnatural Cause'
+            when 5622 then 'Unknown cause' end)                                        as cause_of_death,
+       comments,
+       booking_date,
+       date_created,
+       date_last_modified
+from kenyaemr_etl.etl_ccc_defaulter_tracing f;
+Alter table kenyaemr_datatools.ccc_defaulter_tracing
+    ADD FOREIGN KEY (patient_id) REFERENCES kenyaemr_datatools.patient_demographics (patient_id);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (visit_date);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (patient_id);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (missed_appointment_date);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (true_status);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (cause_of_death);
+ALTER TABLE kenyaemr_datatools.ccc_defaulter_tracing ADD INDEX (tracing_type);
+SELECT "Successfully created ccc_defaulter_tracing table";
+
 -- Create table ART fast track
 create table kenyaemr_datatools.art_fast_track as
 select patient_id,

omod/src/main/resources/sql/Scheduled_Updates.sql

@@ -3010,6 +3010,7 @@ CREATE PROCEDURE sp_update_etl_ccc_defaulter_tracing(IN last_update_time DATETIM
       reason_for_missed_appointment,
       non_coded_missed_appointment_reason,
       tracing_outcome,
+      reason_not_contacted,
       attempt_number,
       is_final_trace,
       true_status,
@@ -3026,6 +3027,7 @@ CREATE PROCEDURE sp_update_etl_ccc_defaulter_tracing(IN last_update_time DATETIM
         max(if(o.concept_id = 1801, o.value_coded, null )) as reason_for_missed_appointment,
         max(if(o.concept_id = 163513, o.value_text, "" )) as non_coded_missed_appointment_reason,
         max(if(o.concept_id = 160721, o.value_coded, null )) as tracing_outcome,
+        max(if(o.concept_id = 166541, o.value_coded, null )) as reason_not_contacted,
         max(if(o.concept_id = 1639, value_numeric, "" )) as attempt_number,
         max(if(o.concept_id = 163725, o.value_coded, "" )) as is_final_trace,
         max(if(o.concept_id = 160433, o.value_coded, "" )) as true_status,
@@ -3037,7 +3039,7 @@ CREATE PROCEDURE sp_update_etl_ccc_defaulter_tracing(IN last_update_time DATETIM
       from encounter e
         inner join person p on p.person_id=e.patient_id and p.voided=0
         inner join form f on f.form_id=e.form_id and f.uuid in ("a1a62d1e-2def-11e9-b210-d663bd873d93")
-        inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093, 1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526) and o.voided=0
+        inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093, 1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526,166541) and o.voided=0
       where e.date_created >= last_update_time
             or e.date_changed >= last_update_time
             or e.date_voided >= last_update_time
@@ -3048,6 +3050,7 @@ CREATE PROCEDURE sp_update_etl_ccc_defaulter_tracing(IN last_update_time DATETIM
       missed_appointment_date=VALUES(missed_appointment_date),
       reason_for_missed_appointment=VALUES(reason_for_missed_appointment),
       tracing_outcome=VALUES(tracing_outcome),
+      reason_not_contacted=VALUES(reason_not_contacted),
       attempt_number=VALUES(attempt_number),
       is_final_trace=VALUES(is_final_trace),
       true_status=VALUES(true_status),

omod/src/main/resources/sql/dwapi/DDL.sql

@@ -1415,6 +1415,7 @@ missed_appointment_date DATE,
 reason_for_missed_appointment INT(11),
 non_coded_missed_appointment_reason VARCHAR(100),
 tracing_outcome INT(11),
+reason_not_contacted INT(11),
 attempt_number INT(11),
 is_final_trace INT(11),
 true_status INT(11),

omod/src/main/resources/sql/dwapi/DML.sql

@@ -2934,6 +2934,7 @@ missed_appointment_date,
 reason_for_missed_appointment,
 non_coded_missed_appointment_reason,
 tracing_outcome,
+reason_not_contacted,
 attempt_number,
 is_final_trace,
 true_status,
@@ -2951,6 +2952,7 @@ max(if(o.concept_id=164093,date(o.value_datetime),null)) as missed_appointment_d
 max(if(o.concept_id = 1801, o.value_coded, null )) as reason_for_missed_appointment,
 max(if(o.concept_id = 163513, o.value_text, "" )) as non_coded_missed_appointment_reason,
 max(if(o.concept_id = 160721, o.value_coded, null )) as tracing_outcome,
+max(if(o.concept_id = 166541, o.value_coded, null )) as reason_not_contacted,
 max(if(o.concept_id = 1639, value_numeric, "" )) as attempt_number,
 max(if(o.concept_id = 163725, o.value_coded, "" )) as is_final_trace,
 max(if(o.concept_id = 160433, o.value_coded, "" )) as true_status,
@@ -2963,7 +2965,7 @@ e.voided as voided
 from encounter e
 	inner join person p on p.person_id=e.patient_id
 	inner join form f on f.form_id=e.form_id and f.uuid in ("a1a62d1e-2def-11e9-b210-d663bd873d93")
-inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093,1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526)
+inner join obs o on o.encounter_id = e.encounter_id and o.concept_id in (164966,164093,1801, 163513, 160721, 1639, 163725, 160433, 1599, 160716,163526,166541)
 group by e.encounter_id;
 SELECT "Completed processing CCC defaulter tracing forms", CONCAT("Time: ", NOW());
 END $$