Update mandatory SRA Toolkit version to fix TLS handshake error #7
padix-keytest_and_deploy.yml
on: push
Build CCD and wheel for reusing it in several CI jobs
4m 44s
Generate wheels matrix
10s
Check code style
8s
Build source distribution
34s
Test interfaces to databases and applications
3m 33s
Test interface to Muscle 5
1m 8s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
6 errors and 17 warnings
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Test interfaces to databases and applications
Process completed with exit code 1.
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Run benchmarks
Error: Failed to retrieve upload data: 401 Unauthorized
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Run benchmarks
-> Reason: Repository not found (or the token is invalid)
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Run benchmarks
Check that CODSPEED_TOKEN is set and has the correct value
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Run benchmarks
Process completed with exit code 1.
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Build documentation
Process completed with exit code 2.
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Check code style
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Generate wheels matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build CCD and wheel for reusing it in several CI jobs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Upload CCD to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build source distribution
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interface to Muscle 5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build documentation
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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ccd
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33.3 MB |
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internal-build
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49.7 MB |
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release-cp310-macosx_arm64
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36.6 MB |
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release-cp310-macosx_x86_64
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36.9 MB |
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release-cp310-manylinux_x86_64
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49.4 MB |
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release-cp310-win_amd64
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36.6 MB |
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release-cp311-macosx_arm64
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36.6 MB |
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release-cp311-macosx_x86_64
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36.9 MB |
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release-cp311-manylinux_x86_64
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50.4 MB |
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release-cp311-win_amd64
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36.6 MB |
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release-cp312-macosx_arm64
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36.6 MB |
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release-cp312-macosx_x86_64
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36.8 MB |
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release-cp312-manylinux_x86_64
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52.1 MB |
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release-cp312-win_amd64
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36.5 MB |
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release-cp313-macosx_arm64
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36.6 MB |
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release-cp313-macosx_x86_64
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36.8 MB |
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release-cp313-manylinux_x86_64
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51.9 MB |
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release-cp313-win_amd64
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36.5 MB |
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release-sdist
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33.7 MB |
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