fixed truseq naming convention, added libseq print

pachterlab · Mar 8, 2024 · c22574c · c22574c
1 parent 0371352
commit c22574c
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Showing 2 changed files with 12 additions and 12 deletions.
diff --git a/docs/assays/illumina_truseq_dual.spec.yaml b/docs/assays/illumina_truseq_dual.spec.yaml
@@ -9,7 +9,7 @@ modalities:
 - rna
 lib_struct: null
 library_protocol: 10xv3 RNA 3'
-library_kit: Illumina Truseq Dual Index
+library_kit: Illumina TruSeq Dual Index
 sequence_protocol: Illumina NovaSeq 6000
 sequence_kit: NovaSeq 6000 v1.5
 sequence_spec:

diff --git a/seqspec/seqspec_print.py b/seqspec/seqspec_print.py
@@ -91,17 +91,17 @@ def libseq(spec, modality):
 
             n.append(f"{ws}<{arrow}|({idx}) {read_id}")
 
-            s = "\n".join(
-                [
-                    modality,
-                    "---",
-                    "\n".join(p),
-                    libspec.sequence,
-                    complement_sequence(libspec.sequence),
-                    "\n".join(n),
-                ]
-            )
-            return s
+    s = "\n".join(
+        [
+            modality,
+            "---",
+            "\n".join(p),
+            libspec.sequence,
+            complement_sequence(libspec.sequence),
+            "\n".join(n),
+        ]
+    )
+    return s
 
 
 def run_print(data):