updating 10xv2/10xv3 template and adding seq primer to docs

pachterlab · Sep 9, 2024 · 02daa2f · 02daa2f
1 parent 8127a55
commit 02daa2f
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/examples/specs/template/10xv2-template.yaml b/examples/specs/template/10xv2-template.yaml
@@ -78,13 +78,14 @@ library_spec:
     min_len: 16
     max_len: 16
     onlist: !Onlist
-      location: remote
+      file_id: 737K-august-2016.txt.gz
       filename: 737K-august-2016.txt.gz
       filetype: txt
       filesize: 12533759
       url: https://github.com/pachterlab/qcbc/raw/main/tests/10xRNAv2/737K-august-2016.txt.gz
       urltype: http
       md5: 72aa64fd865bcda142c47d0da8370168
+      location: remote
     regions: null
   - !Region
     parent_id: rna

diff --git a/examples/specs/template/10xv3-template.yaml b/examples/specs/template/10xv3-template.yaml
@@ -78,13 +78,14 @@ library_spec:
     min_len: 16
     max_len: 16
     onlist: !Onlist
-      location: remote
+      file_id: 3M-february-2018.txt.gz
       filename: 3M-february-2018.txt.gz
       filetype: txt
       filesize: 115512960
       url: https://github.com/pachterlab/qcbc/raw/main/tests/10xRNAv3/3M-february-2018.txt.gz
       urltype: http
       md5: 3d36d0a4021fd292b265e2b5e72aaaf3
+      location: remote
     regions: null
   - !Region
     parent_id: rna
@@ -104,7 +105,7 @@ library_spec:
     name: cdna
     sequence_type: random
     sequence: XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
-    min_len: 1
+    min_len: 150
     max_len: 150
     onlist: null
     regions: null

diff --git a/myst.yml b/myst.yml
@@ -22,6 +22,7 @@ project:
       children:
       - file: docs/TUTORIAL.md
       - file: docs/USING_SEQSPEC.ipynb
+      - file: docs/SEQ_PRIMER.md
     - file: docs/CONTRIBUTING.md
     - file: docs/CHANGELOG.md