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Tutorials for the Monod package, which fits CME models to sequencing data.

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Tutorials for Monod, a package for CME inference from seq data

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This repository contains tutorials for Monod. The description of the package's functionality and several applications are given in the preprint. For usage instructions, see the readthedocs page. For a small sample workflow, see the Colaboratory notebook and the sample dataset. For genome references (gene length annotations), see the polyA_ref directory.

For figures and theoretical results which appear in the manuscript, see the notebook directory. For the prerequisite data, see the Zenodo package for Monod and for 'Length Biases'.

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Tutorials for the Monod package, which fits CME models to sequencing data.

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