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v0.25.1
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@Lioscro Lioscro released this 08 Jan 20:47
· 485 commits to master since this release
v0.25.1
a15952a

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  • Fixed loompy does not accept empty matrices as data error when providing --loom with --workflow lamanno (#91)
  • When using --h5ad or --loom with -x smartseq, the output matrix has genes as columns, instead of transcripts. For genes that have multiple transcripts, the counts are added. (#93)
  • For -x smartseq, it is now possible to provide a batch TSV instead of FASTQs directly. The batch TSV must contain exactly three columns: cell ID, FASTQ 1 (read 1), FASTQ 2 (read 2).
  • Added an error when an uneven number of FASTQs are provided for -x smartseq (only paired-end reads are currently supported)
  • Turned off all logging and warning messages from h5py and anndata.
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