Skip to content

Issues: pachterlab/gget

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

18 Open 53 Closed
18 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

gget opentargets -r diseases
#168 opened Nov 18, 2024 by adeslatt
error in 'gget setup alphafold'
#167 opened Nov 6, 2024 by mikenada
5
Add modules to interface with new projects from the Enrichr/Archs4 group enhancement New feature or request
#164 opened Oct 2, 2024 by lauraluebbert
Update bgee module to new endpoint enhancement New feature or request
#163 opened Oct 2, 2024 by lauraluebbert
1
Alliance Genome Resources enhancement New feature or request
#162 opened Sep 29, 2024 by lakigigar
Pineapple module to download bio-imaging data enhancement New feature or request
#161 opened Sep 27, 2024 by lauraluebbert
ENCODE downloader enhancement New feature or request
#151 opened Jul 6, 2024 by abearab
2
Hello thanks for the wonderful package. Can you please add support for this https://www.gsea-msigdb.org/gsea/msigdb/ Especially for getting gene sets enhancement New feature or request
#139 opened Jun 13, 2024 by cakeinspace
Add module to collect data from Genomics 2 Proteins portal enhancement New feature or request
#138 opened Jun 6, 2024 by abearab
Module to download MitoCarta3 database enhancement New feature or request
#118 opened Jan 9, 2024 by lauraluebbert
Add module for reactome enhancement New feature or request
#114 opened Nov 29, 2023 by lauraluebbert
GENCODE GTFs+FASTAs enhancement New feature or request
#73 opened Apr 7, 2023 by Yenaled
gget blast can not restrict by taxonomy enhancement New feature or request
#71 opened Apr 5, 2023 by abearab
Ability to match parameters of BLAST as per the web app enhancement New feature or request
#58 opened Jan 21, 2023 by vkullu
2
[gget_alphafold] - Feature Request - Add an option to submit a MSA instead of a protein sequence enhancement New feature or request
#52 opened Jan 9, 2023 by kchennen
1
gget alphafold: Add option to define jackhmmer save directory enhancement New feature or request
#49 opened Dec 10, 2022 by lauraluebbert
Request databases to be added to gget enhancement New feature or request
#19 opened Jun 13, 2022 by lauraluebbert
3
Add feature to fetch UCSC IDs enhancement New feature or request
#18 opened Jun 10, 2022 by Joaodemeirelles
ProTip! Exclude everything labeled bug with -label:bug.