Minor updates to argument naming

pachterlab · Sep 8, 2024 · 9473015 · 9473015
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diff --git a/R/concordex-internals.R b/R/concordex-internals.R
@@ -60,10 +60,10 @@
         x,
         labels,
         ...,
-        n_neighbors=30,
-        compute_similarity=FALSE,
         BLUSPARAM,
         BNINDEX,
+        n_neighbors=30,
+        compute_similarity=FALSE,
         BNPARAM=KmknnParam(),
         BPPARAM=SerialParam(),
         precomputed=FALSE,

diff --git a/README.Rmd b/README.Rmd
@@ -91,14 +91,14 @@ recent bioRxiv preprint
 >  Jackson, K.; Booeshaghi, A. S.; Gálvez-Merchán, Á.; Moses, L.; Chari, T.; Pachter, L. Quantitative assessment of single-cell RNA-seq clustering with CONCORDEX. bioRxiv (Cold Spring Harbor Laboratory) 2023. https://doi.org/10.1101/2023.06.28.546949.
 
    @article {Jackson2023.06.28.546949,
-	author = {Jackson, Kayla C. and Booeshaghi, A. Sina and G{\'a}lvez-Merch{\'a}n, {\'A}ngel and Moses, Lambda and Chari, Tara and Kim, Alexandra and Pachter, Lior},
-	title = {Identification of spatial homogeneous regions in tissues with concordex},
-	year = {2024},
-	doi = {10.1101/2023.06.28.546949},
-	publisher = {Cold Spring Harbor Laboratory},
-	URL = {https://www.biorxiv.org/content/early/2024/07/18/2023.06.28.546949},
-	journal = {bioRxiv}
-}
+        author = {Jackson, Kayla C. and Booeshaghi, A. Sina and G{\'a}lvez-Merch{\'a}n, {\'A}ngel and Moses, Lambda                 and Chari, Tara and Kim, Alexandra and Pachter, Lior},
+	    title = {Identification of spatial homogeneous regions in tissues with concordex},
+	    year = {2024},
+	    doi = {10.1101/2023.06.28.546949},
+	    publisher = {Cold Spring Harbor Laboratory},
+	    URL = {https://www.biorxiv.org/content/early/2024/07/18/2023.06.28.546949},
+	    journal = {bioRxiv}
+    }
 
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