Merge branch 'devel' of https://github.com/pachterlab/alabaster.sfe i…

…nto devel
pachterlab · Dec 4, 2024 · 3c3edd8 · 3c3edd8
2 parents 7dc5e56 + 41dede4
commit 3c3edd8
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/R/saveImages.R b/R/saveImages.R
@@ -45,7 +45,7 @@ setMethod("saveObject", "SpatRaster", function(x, path, ...) {
     # That what the !inMemory(x) is for. Resaving with writeRaster is slow
     if (is_geotiff || !inMemory(x)) {
         ex <- .file_ext(f)
-        file.copy(f, file.path(path, paste0("image", ex)))
+        fs::file_copy(f, file.path(path, paste0("image", ex)))
     } else {
         writeRaster(x, file.path(path, "image.tiff"), ...)
     }
@@ -97,10 +97,10 @@ setMethod("saveObject", "BioFormatsImage", function(x, path, ...) {
     if (length(fns) > 1L) {
         new_dir <- file.path(path, "image")
         dir.create(new_dir)
-        file.copy(fns, new_dir)
+        fs::file_copy(fns, new_dir)
     } else {
         ex <- .file_ext(f)
-        file.copy(f, file.path(path, paste0("image", ex)))
+        fs::file_copy(f, file.path(path, paste0("image", ex)))
     }
 })