Skip to content

HARE v1.1.0
Compare
Choose a tag to compare
@ossmith ossmith released this 10 Jan 17:31
· 7 commits to main since this release
v1.1.0
55296cd
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

January 10, 2024

New ✨

  • You can now install dependencies using conda (environment.yml file included) and the hare package using pip for easier and more consistent installation
  • As a result, the tool runs smoothly from the command line with commands like hare intersect
  • Added unit tests to improve reliability and check installation
  • Introduction of the prerank function which allows you to create ranked lists of genes for enrichment analysis in tools like GSEA and WebGestalt
  • More options and flags to make runs more flexible and reduce the need to manipulate files upstream of using the pipeline

Fixes 🔧

  • Catching various possible failures from dependencies and user inputs and raising errors with clear error messages
  • Significance testing is now done with Python packages instead of R, reducing the chance of dependency clashes or run failure

Deprecated 👋

  • The directory of example files is gone (you can now test your install with unit testing). If you'd like to see what input and output files look like, you can still review details using the data dictionary (dataDictionary.md)
Assets 2
Loading