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@zhangqf-lab Zhang Lab @Tsinghua University, School of Life Sciences

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    15 repositories

    • CCI-seq

      Public
      Unbiased capturing large-scale physical cell-cell interaction networks in complex tissues through combinatorial cell-clump indexing and single-cell sequencing
      Jupyter Notebook
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • SPACE

      Public
      Jupyter Notebook
      •
      MIT License
      •0•6•2•0•Updated Sep 13, 2024Sep 13, 2024

    • PrismNetWeb

      Public
      0•0•0•0•Updated Jan 27, 2023Jan 27, 2023

    • CryoRes

      Public
      0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • VRmol

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Feb 26, 2022Feb 26, 2022

    • PrismNet

      Public
      Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
      Python
      •
      MIT License
      •0•5•0•0•Updated Feb 26, 2022Feb 26, 2022

    • ZIKV-RNA-Structure

      Public
      Scripts for ZIKV RNA structure analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • smartSHAPE

      Public
      Scripts for SMART-SHAPE analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • SARS-CoV-2

      Public
      Scripts for SARS-CoV-2 RNA structure analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RNA_Structure_Dynamics

      Public
      Scripts for RNA Structure Dynamics Analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RIP-icSHAPE-MaP

      Public
      Scripts for RIP-icSHAPE-MaP analysis
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RASP

      Public
      RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure probing database.
      JavaScript
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • icSHAPE-pipe

      Public
      icSHAPE-pipe is a pipeline to calculate icSHAPE score in genome with sliding window strategy.
      C++
      •0•2•0•0•Updated Feb 20, 2022Feb 20, 2022

    • SCALE

      Public
      Single-cell ATAC-seq analysis via Latent feature Extraction
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 20, 2022Feb 20, 2022

    • awesome-cryoem

      Public
      A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
      Creative Commons Zero v1.0 Universal
      •35•0•0•0•Updated Jan 25, 2021Jan 25, 2021